Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq28107 109 7e-19 seq2 96.9 4e-15 seq7 91.5 2e-13 >seq28107 Length=123132 Score = 109 bits (120), Expect = 7e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 183579 TGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGG 183638 |||||| ||| || || ||||| ||||| | || || ||| || |||| || | || Sbjct 14819 TGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGG 14878 Query 183639 TCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCT 183698 ||| || ||| ||||||||||| || || ||| ||| || || |||| |||| | Sbjct 14879 TCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 14938 Query 183699 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGG 183758 ||| || || || ||||| || || || ||||| || || ||||| | ||||| ||||| Sbjct 14939 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGG 14998 Query 183759 TGTCTTCGGTGGTTCTCT 183776 ||| ||||| || || || Sbjct 14999 TGTATTCGGCGGCTCACT 15016 >seq2 Length=32560536 Score = 96.9 bits (106), Expect = 4e-15 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 170979 TTTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTG 171038 ||||| ||| | || ||| || |||||||| |||||| |||| ||| |||| | Sbjct 25898655 TTTGACTGTCCAGATGATGTTTACATTCTTGACCATGCTGAGGAAGTTGGAATTGAACTT 25898714 Query 171039 AACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCT 171098 || || || | |||||| ||||||| | |||||||| ||| ||| | |||| | Sbjct 25898715 CCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAAT 25898774 Query 171099 GTTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTG 171158 ||| |||| ||| ||||| ||||||||||| ||||||||| ||||| |||| Sbjct 25898775 GTTAATCAGGAAGATGGTTCTTTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTT 25898834 Query 171159 ACCTGCGTCTCATATCCTACAAGTGATTGTGTAATCTT--GACTGAACAGGAAGAG 171212 || || || | | |||||| ||| ||| || | || |||| | |||||||| Sbjct 25898835 ACTTGTGTTGCTTTCCCTACATCTGA-TGT-TACTATTGAGACTCACAAGGAAGAG 25898888 >seq7 Length=30551617 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 171005 TCTT-GATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||| ||||| || || | |||||| |||| | |||||||||||||||||||| | Sbjct 3659799 TCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGTGCGT 3659740 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 | || |||||||||||||| ||| ||||||||| ||||| || ||| || | | Sbjct 3659739 GCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCATATC 3659680 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTG 171183 | || || | ||| || | |||||| | || ||||| || | ||||| || | Sbjct 3659679 TCGACGACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACTTCAG 3659620 Query 171184 ATTGTGTAAT 171193 ||||||| || Sbjct 3659619 ATTGTGTTAT 3659610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621766744110120