Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq28107 123 3e-23 >seq1 Length=28142018 Score = 141 bits (156), Expect = 1e-28 Identities = 240/345 (70%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 165249 GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCC 165308 |||||| | || || || || || || || ||||||||||| ||| | || |||||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 165309 TATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGT 165368 ||| | || ||| ||||| | ||||||||||| |||||||| | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 165369 CATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAA 165428 |||||| | || | || ||||||||| | | || | || || | | ||||| ||| Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGTGTTGGTGTCAA 23237680 Query 165429 CTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 165488 | || || | ||||||||||| || || ||||| || || | | | |||||||| ||| Sbjct 23237681 TTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 23237740 Query 165489 CTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTT 165547 | || || |||||||| || || || || | | || ||||| ||||| || | || Sbjct 23237741 TTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCACATT 23237799 Query 165548 CTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCC 165592 ||| ||||| | || ||| || ||| ||| || || || ||||| Sbjct 23237800 CTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 >seq28107 Length=123132 Score = 123 bits (136), Expect = 3e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 164302 TTGGATTTGC-GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCT 164360 || || |||| || ||||| || ||||| || || || || | |||||| ||| || ||| Sbjct 14809 TTTGAGTTGCTGTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCT 14868 Query 164361 ATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCA 164420 | || | ||||| || || || |||| |||||||| || |||||||| || |||| Sbjct 14869 ACCCAATAGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCA 14928 Query 164421 ACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCG 164480 ||| ||| | || || ||||||||||| || || || ||||| || || | ||| | | Sbjct 14929 ACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAG 14988 Query 164481 GCGTAGCAGGTGTGTTTGGCGGTTCTCT 164508 | ||||| ||||| || ||||| || || Sbjct 14989 GTGTAGCTGGTGTATTCGGCGGCTCACT 15016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557382187975320