Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 seq38608 132 6e-26 seq2 98.7 1e-15 seq4 87.8 2e-12 seq7 84.2 3e-11 >seq1 Length=28142018 Score = 149 bits (164), Expect = 7e-31 Identities = 244/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 178935 GGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCG 178994 |||||| |||| || || || || || || || ||||||||||| || | || ||| Sbjct 23237501 GGTTGGTTCACAGGTACCACCTTTGTAACTTCATGGTATACTCATGGATTGGCAAGTTCC 23237560 Query 178995 TATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGA 179054 ||| | || || ||||| ||| | ||||| || || || ||||||| | | | | | | Sbjct 23237561 TATTTGGAAGGTTGTAACTTCTTAACTGCGGCAGTCTCTACTCCTGTTAATAGTTTAGCA 23237620 Query 179055 CATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTT--CGTCCGCTGGCTCC 179112 ||||| | | | || |||||||| |||| || | |||||| ||| | ||| | Sbjct 23237621 CATTCTTTGTTGTTACTGTGGGGTCCTAAAGCACATGAAGATTTTACGT--GTTGGTGTC 23237678 Query 179113 AACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCA 179172 || | || || | ||| ||||||| || || |||||||| |||| | |||||||| | Sbjct 23237679 AATTAGGTGGTATGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTA 23237738 Query 179173 TGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCG 179231 || | || || |||||| | || | ||| || | | || ||||| ||||||||| | Sbjct 23237739 TGTTACGTCAATTTGAACTTGCTTGATCTGTTCAAT-TGCGGCCTTATAATGCAATCACA 23237797 Query 179232 TTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCC 179278 || || ||||||| || ||| ||||| | ||| || || || ||||| Sbjct 23237798 TTCTCCGGTCCAAGTGTTGTTTTTGTTTATGTATTCCTGATTTATCC 23237844 >seq38608 Length=401930 Score = 132 bits (146), Expect = 6e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 179679 GCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTC 179738 || |||||||| ||||| ||||| ||| | || || || |||||||| || ||||| ||| Sbjct 348914 GCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTGAGACTTTC 348855 Query 179739 TATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAA 179798 || ||||| || || || || || |||||| | |||||||||||||| | ||||| Sbjct 348854 TACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAG 348795 Query 179799 CCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 348794 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 348742 >seq2 Length=32560536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 176151 TTTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTC 176210 ||||| ||| | || ||| || ||||| || ||||||||||| ||| ||||||| Sbjct 25898655 TTTGACTGTCCAGATGATGTTTACATTCTTGACCATGCTGAGGAAGTTGGAATTGAACTT 25898714 Query 176211 AACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACG 176270 ||||| ||| | |||||| | ||||| |||||| || ||| | | || | Sbjct 25898715 CCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAAT 25898774 Query 176271 GTAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTG 176330 || |||| ||| || || ||||||||||| ||||| || | ||||| |||| Sbjct 25898775 GTTAATCAGGAAGATGGTTCTTTTCTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTT 25898834 Query 176331 ACTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 ||||||||| | | ||||| ||| | ||||||||| | || ||||||||||| Sbjct 25898835 ACTTGTGTTGCTTTCCCTACATCTGATGTTACTATTGAGACTCACAAGGAAGAGGAACT 25898893 >seq4 Length=28907061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 176181 GATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCG 176240 ||||| || ||| | || |||||||||||| || |||||||||||||| || || || Sbjct 20821541 GATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGCCGCGCTGGAGCATGCTCT 20821482 Query 176241 AGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGAT 176300 | |||||| ||||| | | || || | || ||||| ||| || ||| | ||| Sbjct 20821481 ACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCTGATGGCTCTTTCTTGGAT 20821422 Query 176301 GATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGT 176360 || | || | | | ||| || | || || |||||||| ||||| || || | Sbjct 20821421 GACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCCTATCCAACTGCAGACGTT 20821362 Query 176361 GTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 || ||||| ||| | || |||| |||||||| ||| Sbjct 20821361 GTAATTGAAACTCACAAGGAAGGAGAACTTTACTGA 20821326 >seq7 Length=30551617 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 176181 GATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCG 176240 ||||| || ||| | |||||||||||||| || ||||| || |||||||| || || Sbjct 3659794 GATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGTCGTGCTGGTGCGTGCTCT 3659735 Query 176241 AGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGAT 176300 | ||||| || || | | || || | |||||||| ||| || | || || Sbjct 3659734 ACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTAGATCAGTCTGATGGCTCATATCTCGAC 3659675 Query 176301 GATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGT 176360 || | || || ||| |||||| | || || |||||| | ||||| || |||||| Sbjct 3659674 GACGGTCAAATAAATGAAGGTTTTGTGCTAACCTGTGTTGCCTATCCAACTTCAGATTGT 3659615 Query 176361 GTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 || ||| | || | ||||||| || || |||||| Sbjct 3659614 GTTATTCACACGCACAAAGAAGGCGATCTCTATTGA 3659579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596016120094160