Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 183 3e-41 seq28226 179 4e-40 >seq2 Length=32560536 Score = 183 bits (202), Expect = 3e-41 Identities = 439/659 (67%), Gaps = 19/659 (3%) Strand=Plus/Minus Query 23200 CTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTA 23259 |||||||||||| ||| ||||| |||||||| || | || ||||| || || || Sbjct 19587707 CTATTCATAACAGAAGCTTTCTGATACTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTC 19587648 Query 23260 CCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT- 23318 |||| | || || |||||| ||||||| ||||| | |||||| | ||| Sbjct 19587647 CCCTGAAGCGAAATCAATTCCATCCAATCAAAAGGATTCTGAACATTATAAAT---TTTC 19587591 Query 23319 --ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAA 23376 ||| | || || | |||||| || ||||| |||||||| |||| |||||| Sbjct 19587590 CCACAACCAAGCTCACCCAATAACCTATCAGCAACAAACTCAATATACTGACTCATCAAT 19587531 Query 23377 TCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATG 23436 ||| ||| || || | | |||| ||| ||| | | ||| | | ||||| Sbjct 19587530 TCACCGTTCATTCCAACCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATC 19587471 Query 23437 GAAACAGCATCTTT---AATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA 23493 ||| ||||| ||| ||| ||| ||||||||| || | | | ||| Sbjct 19587470 TCAACCGCATCACGGACAATAGTTTTCACACGC---TCTTCACTAAGTTTCTTTCTCAAA 19587414 Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 | | | | |||||| || ||||||||||| || ||||| || | ||| | || Sbjct 19587413 AGCGAATAAAGTAAACAAGCGAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCG 19587354 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 || ||||| ||||| || |||||||| || |||||||||| ||| || |||||| ||| Sbjct 19587353 TTTGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAAAAA 19587294 Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673 ||| ||||| || ||||| |||||| ||||| || || | | | | |||||| Sbjct 19587293 CTTCCAGAAAAAAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAA 19587234 Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 || |||| |||||||| | | ||||| ||| ||| | |||| ||| Sbjct 19587233 TCAGATGAATC---GATCCATTTCATAGCCCAATCAGCTTTCTTCGCGATACACGGAATC 19587177 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCAT--TATCTGTTATATATGTATCAA 23791 || |||||||| | | | ||| | || |||| || ||| | ||||| || |||| Sbjct 19587176 GTCTCAATTGC--ATGAAACAAACGATTCTTCTCAATAGAATCATTGATATAAGTTTCAA 19587119 Query 23792 TTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 | | | ||||||||| ||||||||||||||||| || || ||||| || || || ||| Sbjct 19587118 TCAAGAGACTATACATCTCAGAATGAATATTTTCGATCGCGATCTGGAAACCGTAGAAA 19587060 >seq28226 Length=90112 Score = 179 bits (198), Expect = 4e-40 Identities = 483/737 (66%), Gaps = 9/737 (1%) Strand=Plus/Minus Query 23200 CTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTA 23259 |||||||||||| ||| |||||||||||||| || | || ||||| || || || Sbjct 35103 CTATTCATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTC 35044 Query 23260 CCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA 23319 |||| | || || ||||| ||||||| ||||| | |||||| | | | Sbjct 35043 CCCTGAAGCGAAATCAAATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCTCA 34984 Query 23320 CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 || | || || | |||||| || ||||| |||||||| |||| |||||||||| Sbjct 34983 CAACCAAGCTCACACAACAACCTATCAGCAACAAACTCAATATACTGACTCATCAAATCA 34924 Query 23380 TAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAA 23439 || || || | | |||| ||| || | | ||| | ||||| | Sbjct 34923 CCATTCATTCCAACCAAAGCGCAAGGAAGCGCTTCGCAAACAAATTCCCTCTCAATCTCA 34864 Query 23440 ACAGCATCTTT---AATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATAC 23496 || || || |||| | | ||| |||||||| || || | ||| | Sbjct 34863 ACCGCGTCACGCACAATTGTCTTCACACGC---TCTTCACTCAGTTTATTCCTCAAAAGC 34807 Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 | | | ||||| |||||||| ||||| || ||||| || | ||| | ||||| Sbjct 34806 GAATAAATCAAACAGGCAAAATCGCAATGAAGTCCTTCGTCGCGTGAAATAAGCTCATTT 34747 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||||| ||||| || |||||||| || |||||||||| |||||| |||||| || | Sbjct 34746 GAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTT 34687 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || || || || ||||| |||||| ||||| || || | | | | |||||| || Sbjct 34686 CCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCA 34627 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 |||| |||||||| | | ||||| ||| ||| | | | ||| ||| || Sbjct 34626 GATGAATCG---ATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATAGTC 34570 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | || | | | | || || || ||| ||||| || ||||| | Sbjct 34569 TCAATCGCGTGAAACAAACGATTCTTCTCAACAGAATCATGGATATAAGTTTCAATCAAG 34510 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | ||||||||| |||||||||||||| || || |||||||| || || || ||| | Sbjct 34509 AGACTATACATCTCAGAATGAATATTCTCGATCGCAATCTGGAATCCGTAGAAAGCACGC 34450 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 || || || | |||||| || || | |||||| || | ||| || ||||| || Sbjct 34449 GCCTCTGATACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACAATGCCG 34390 Query 23917 TCACTAGCAGCAAAGAA 23933 || |||||||||||| Sbjct 34389 TCGGAAGCAGCAAAGAA 34373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521233442151400