Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq595 102 2e-16 seq397 102 2e-16 seq1747 100 6e-16 seq186 100 6e-16 seq177 100 6e-16 seq20 100 6e-16 seq1689 98.7 2e-15 seq983 98.7 2e-15 seq612 98.7 2e-15 seq481 98.7 2e-15 seq438 98.7 2e-15 seq255 98.7 2e-15 seq185 98.7 2e-15 seq126 98.7 2e-15 seq106 98.7 2e-15 seq68 98.7 2e-15 seq1125 96.9 7e-15 seq838 96.9 7e-15 seq1340 95.1 3e-14 seq1210 95.1 3e-14 seq145 89.7 1e-12 >seq595 Length=265386 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 30270 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 30211 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 30210 GCCCCACGGTGGGC 30197 >seq397 Length=54894 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 38399 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 38340 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 38339 GCCCCACGGTGGGC 38326 >seq1747 Length=56149 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 14895 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 14954 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 14955 AGCCCCACGGTGGGC 14969 >seq186 Length=570249 Score = 100 bits (110), Expect = 6e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||| | |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 139671 AAACAATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 139730 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 139731 GTTCGAGCCCCACGGTGGGC 139750 >seq177 Length=575278 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 496468 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 496409 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 496408 AGCCCCACGGTGGGC 496394 >seq20 Length=393105 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 173520 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 173579 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 173580 AGCCCCACGGTGGGC 173594 >seq1689 Length=61243 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 19750 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19691 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19690 CCCACGGTGGGC 19679 >seq983 Length=163065 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 110655 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 110596 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 110595 CCCACGGTGGGC 110584 >seq612 Length=258758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 171063 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 171122 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 171123 CCCACGGTGGGC 171134 >seq481 Length=311705 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 39862 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39803 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39802 CCCACGGTGGGC 39791 >seq438 Length=393907 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 321170 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 321111 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 321110 CCCACGGTGGGC 321099 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||| ||| || || |||| || |||||||||||||||| Sbjct 146297 TTGCCCGTCTAGCTCAGTTGGTAGAACGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 146238 Query 165768 GCCCCACG 165775 |||||||| Sbjct 146237 GCCCCACG 146230 >seq255 Length=465567 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 351104 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 351045 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 351044 CCCACGGTGGGC 351033 >seq185 Length=764317 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 346787 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 346728 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 346727 CCCACGGTGGGC 346716 >seq126 Length=691112 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 629715 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 629656 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 629655 CCCACGGTGGGC 629644 >seq106 Length=1011470 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 698618 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 698677 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 698678 CCCACGGTGGGC 698689 >seq68 Length=893452 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 202713 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 202654 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 202653 CCCACGGTGGGC 202642 >seq1125 Length=135870 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 106191 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 106250 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 106251 CCCCACGGTGGGC 106263 >seq838 Length=235348 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||| |||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 98387 TGCCCGTCCAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 98328 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 98327 CCCCACGGTGGGC 98315 >seq1340 Length=103575 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||| |||||||||||| Sbjct 49050 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCGAGC 49109 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 49110 CCCACGGTGGGC 49121 >seq1210 Length=122563 Score = 95.1 bits (104), Expect = 3e-14 Identities = 582/908 (64%), Gaps = 39/908 (4%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||| ||||| || | || ||||| |||||||| || || | || Sbjct 42256 TTCTGTATGTTCCCAATTCAATACCCTAAAATCTGGGAAATGTACAAAAAAGCCGAAGCT 42315 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGA-CGTCGTCGACTGGCGTGAGAA 229868 ||||||||||| | || ||||| | | | ||| | || || ||||| | || Sbjct 42316 TCTTTCTGGACCGCCGAAGAAGTCGATTTATCGGAAGATCTTCATC-ACTGGA---ACAA 42371 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 || | |||| |||||| || || ||| |||| | || | || || || | ||||| Sbjct 42372 CCTAACCGACGGCGAACGCCACTTTATCTCACACGTTCTTGCCTTCTTTGCCGCTTCCGA 42431 Query 229929 TGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAG 229986 || || || |||| ||||| |||| || || || ||||| || ||||| Sbjct 42432 CGGCATCGTCTTGGAGAATCTTGCAGG--AAGATTCATGAAAGAAGTTCAAGTCTCAGAG 42489 Query 229987 GCACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAACAATAT 230043 || || || || | | ||| | || || | |||| || ||||||||| ||| Sbjct 42490 GCGCGTGCTTTCTACGGATTCCAGATCGCAATCGA-GAAT--ATTCATTCTGAAATGTAT 42546 Query 230044 GCTCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTT---TGAT 230100 ||| | || || | |||| || | || || ||| | | ||| | || Sbjct 42547 AGTCTCTTGATTGAGAC--TTATATCA-ATGATTCAGTTGAGAAGAATCGTTTGTTTCAT 42603 Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 || ||||||| || || || || || || | |||||| ||||||| | || Sbjct 42604 GCAATTGAAACGATTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGAAATGGATCGAT 42663 Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 | | | || ||||| || | |||| || | | |||||||||||||| | || Sbjct 42664 TCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTC 42723 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTC 230277 || || |||||||| || || || ||||| || ||| ||| | |||||||| | Sbjct 42724 TCTGGAAGTTTCTGTGCAATTTTCTGGCTT---AAAAAACGTGGTTTAATGCCTGGTTTA 42780 Query 230278 GGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT 230337 | | || |||||| | || || ||||| || || ||| | || | | | || Sbjct 42781 ACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGACTTCATTGTGATTTTG-CTTGTTT 42839 Query 230338 -ATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-GA-CG-GTCAAACAAATCATTAC 230393 || ||||| ||| || ||| || ||| || || || || || | Sbjct 42840 GATTTATTC---GCTTTTGAGAAAGAAACTTAGCGAAGAGCGTGTGAAGACGATTGTGCG 42896 Query 230394 AGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTG 230452 || || ||||| | ||| | || || |||| || || |||| || ||| ||| ||| Sbjct 42897 CGATGCTGTTGAGATCGAGAGAGAATTTGTTTGCGAAGCGCTTCCTTG-CGCTTTAGTTG 42955 Query 230453 GCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT-T 230511 | ||||| | ||| | ||| | ||||| || || || || || || | ||| |||| | Sbjct 42956 GAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATAG-ATTGTTGTGT 43014 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 | ||||||| | |||| | || || | |||| || |||| | ||||| | ||| Sbjct 43015 GAGCTTGGTTGTGGGAAAATTTATAATGTTCAGAATCCTTTTGATTGGATGGATTTGATT 43074 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 |||||||| ||||| || ||||| || || ||||| || | || ||||||| || | Sbjct 43075 TCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGCGAGTATCAGAAAGCTTCT 43134 Query 230632 GTGATGAA 230639 || ||||| Sbjct 43135 GTTATGAA 43142 >seq145 Length=649883 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 165714 GTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCA 165773 |||||||||||| |||||||||| || || |||| || |||||||||||||||||||||| Sbjct 160974 GTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 161033 Query 165774 CGATGGG 165780 || |||| Sbjct 161034 CGGTGGG 161040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057452312381120