Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq520 147 2e-30 >seq520 Length=294854 Score = 147 bits (162), Expect = 2e-30 Identities = 556/865 (64%), Gaps = 7/865 (1%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | |||||| || || |||||||||||||| |||| || || || ||| Sbjct 261805 TGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAATTCC 261864 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||||||||| | | | | ||||| | || ||||| | | |||| Sbjct 261865 ATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAATAAT 261924 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 ||||| || ||||| || |||||||| | ||| || || | ||||||||| | | | | Sbjct 261925 CTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCA-AAGC 261983 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACT 16914 || ||||| ||||| | |||| | ||| || ||||||| || || |||| | Sbjct 261984 ACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAATAGT 262043 Query 16915 AGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATC 16974 || || || || || | | | | | | | | | | | ||| || ||||| Sbjct 262044 TTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAAAATC 262103 Query 16975 GCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 ||||| | || ||||| | ||||| ||||| ||||| || || || ||||| Sbjct 262104 ACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCATTAA 262163 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 || ||||| || | |||||| || | ||| || || || |||||||| || || Sbjct 262164 ACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTTCAAC 262223 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 | ||||| || | | || ||| || | | | || || ||||||||| Sbjct 262224 ACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATC--AGATGAATCG-ATCCATTTCAT 262280 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTC 17214 |||| || ||||| | || ||| ||||| || || || | |||||| | Sbjct 262281 AGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACGAT- 262339 Query 17215 TTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 | ||| | ||| || | ||||| || || || | || || |||||||| || || | Sbjct 262340 TCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATGAA 262399 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 |||| || || || ||||| || ||||||||| || || || | | ||||||||| Sbjct 262400 TGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTCTT 262459 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 ||||| | | || ||||| || || || |||||| ||||| || || || | Sbjct 262460 TCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAGCAA 262519 Query 17394 ATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTT 17453 | || ||||| | |||| | || || | ||||| | ||||| Sbjct 262520 GAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGATCTT 262579 Query 17454 TGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCC 17513 || | ||| |||||||| | ||||| || ||| | || ||||| ||||| | || Sbjct 262580 GTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTTCCC 262639 Query 17514 AAATATCATTGTATTGTATGGGGAA 17538 |||| | | |||||| || ||||| Sbjct 262640 AAATTTTAGGGTATTGAATCGGGAA 262664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517368185368320