Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1210 178 1e-39 seq520 158 1e-33 >seq1210 Length=122563 Score = 178 bits (196), Expect = 1e-39 Identities = 398/587 (68%), Gaps = 17/587 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| || || || ||||| ||||||||||| | ||||| ||||| ||||||||||| Sbjct 42837 ACAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAA 42778 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || |||||| || ||||| || | |||||| || ||| || || || || || Sbjct 42777 ACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAA 42718 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 |||||| |||||| | |||||||| | | | ||| || | | | || | || || Sbjct 42717 TATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAAT--CG 42660 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||||||| |||| || ||||| | | | |||||| |||||||| || || | Sbjct 42659 -ATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATG 42601 Query 16441 AAACAATTTCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||| | || || |||| ||| | ||||| || ||||||| | ||| ||| Sbjct 42600 AAACAAACGATTCTTCTCAACTGA--ATCATTGATATAAGTCTCAATCAAGAGACTATAC 42543 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 ||||| || || || ||||| || || ||||| ||||| ||| ||||| || ||||| | Sbjct 42542 ATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCTGA 42484 Query 16558 TATTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | ||| ||||| || | |||| | | || || ||||| ||||| ||||| Sbjct 42483 GACTTGAACTTCTTTCATG---AATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGA 42427 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 || ||||| || || | | ||| || || | |||| | || || | | Sbjct 42426 AGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTT 42367 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | | ||||| |||| ||| |||||||| | ||||| || ||| | || Sbjct 42366 CCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGC 42307 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA-ATAC 16779 ||||| ||||||| ||| || | | |||||| | |||||| |||| Sbjct 42306 TTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACATAC 42260 >seq520 Length=294854 Score = 158 bits (174), Expect = 1e-33 Identities = 566/874 (65%), Gaps = 17/874 (2%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || || || | |||||| || || || ||||||||||| |||| | || || |||| Sbjct 261805 TGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAATTCC 261864 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || ||||||| ||||| | | | | || || | || ||||| | |||| Sbjct 261865 ATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAATAAT 261924 Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 ||||| || ||||| || |||||||||| ||| || || | || ||||| | | | Sbjct 261925 CTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAAA-GC 261983 Query 16094 ACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATC 16152 || ||||| |||| | ||||| | || || ||||||| || || ||| Sbjct 261984 ACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAATAGT 262043 Query 16153 GGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTC 16212 | | || |||| || | | | | | | | | || ||| || || || Sbjct 262044 TTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAAAATC 262103 Query 16213 GCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTT 16272 ||||| || |||||||| | ||||| ||||| ||||||||||| || |||||| Sbjct 262104 ACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCATTAA 262163 Query 16273 TCCTCGTTTCTTTAACCAGAATATCG--CAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 || ||||| || | ||| || || | ||| || | || || || |||||||| ||| Sbjct 262164 ACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACT--ACCGGAGAAAAATATACCTTCA 262221 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTC 16390 ||| | |||||||| | | || ||| || | | | || | || || ||||||||| Sbjct 262222 ACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAAT--CG-ATCCATTTC 262278 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTC 16450 |||| || ||||| | |||||| ||||| || || || | ||| || Sbjct 262279 ATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACGA 262338 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 | ||||| | ||| | ||||| || ||||||| | ||| |||||||| || || Sbjct 262339 TTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATGA 262398 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC- 16569 ||||| || || || ||||| || || || ||| || ||||| | | ||| ||||| Sbjct 262399 ATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTCT 262458 Query 16570 --CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 || | |||| | | || || ||||| || |||||||| || ||||| || Sbjct 262459 TTCATG---AATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAA 262515 Query 16628 GCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAA 16687 || | | ||| ||||| | |||| | || || | | ||| | | | Sbjct 262516 GCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGA 262575 Query 16688 TCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATT 16747 |||| || | ||| |||||||||| ||||| || ||| | || ||||| |||||| Sbjct 262576 TCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATT 262635 Query 16748 TTCCAAATATCATTGTATTGTAT-GGGAA-ATAC 16779 | |||||| | | |||||| || ||||| |||| Sbjct 262636 TCCCAAATTTTAGGGTATTGAATCGGGAACATAC 262669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511239087143680