Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1206 96.9 3e-15 seq130 93.3 3e-14 >seq1206 Length=122864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || || || | ||| ||||||||||||||||| |||| Sbjct 80440 ACATGAGCAATCATGCATGTCAAGAGTGCATAAGATGCAATGTTAAATGGCACGCCTAGG 80499 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||||| ||||| |||| |||||||| |||||| || | || |||| Sbjct 80500 CCCATGTCAGCAGATCGTTGATACATTTGACATGATAACTCCCCAT 80545 >seq130 Length=684502 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101758 ATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCC 101817 ||||||||||||||| || || || | ||| ||||||||||||||||| || | || Sbjct 344794 ATGAGCAATCATGCATGTCAAGAGGGCATAAGATGCAATGTTAAATGGCACACCCAGGCC 344853 Query 101818 CATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT 101861 ||| ||||| ||||||||||||| |||||| || | || |||| Sbjct 344854 CATGTCAGCAGATCTTTGATACATTTGACATGATAACTCCCCAT 344897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361130459011424