Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq520 268 1e-66 seq1210 242 4e-59 >seq520 Length=294854 Score = 268 bits (296), Expect = 1e-66 Identities = 587/872 (67%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || ||||| || || || || || ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 |||||| |||| | ||||| ||||||||| ||| || | | || | |||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 24020 |||||||| || |||||||| |||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 || || ||||| || || || ||||||| ||||| ||||| || | | Sbjct 261981 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACA 262038 Query 24081 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 |||| | | || |||||||| || | ||| | | | | ||||| || Sbjct 262039 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCA 262098 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||| Sbjct 262099 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 262158 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGATCCAGAAAAGAAAATTCC 24259 |||| ||||| |||||||||||||| || || | ||| | || || || || || || Sbjct 262159 ATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTA-CCGGAGAAAAATATACC 262217 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGTATCCACT 24318 ||| || ||||| |||| | |||||| || | | | || || ||||| | Sbjct 262218 TTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATT 262276 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 | ||||||||| || ||||| | |||||| || || || || |||| ||| | | Sbjct 262277 TCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAAC 262336 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 || ||||| || ||| || | ||| || |||||||| |||||||||||||| |||| Sbjct 262337 GATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAAT 262396 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 ||||||||||||| || || || || ||||| || | ||||| | | || |||| Sbjct 262397 GAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTT 262456 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 || | |||| | | || | ||| || ||||| ||||| ||| ||||| || | Sbjct 262457 CTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAG 262516 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 | | || ||| || || | |||| | ||||| || ||||| | | | || Sbjct 262517 CAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGAT 262576 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 ||| || | ||| |||||||| ||||||| ||||| || || || ||||| ||||| | Sbjct 262577 CTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTT 262636 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATA 24710 ||| || | | | |||||||| || || ||| Sbjct 262637 CCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 242 bits (268), Expect = 4e-59 Identities = 586/875 (67%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 ||||| |||| | ||||| ||||||||| ||| | | | || | ||| | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 24020 ||||||||| || |||||||| ||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 || || ||||| || | || ||||||| || || || || || | | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 24081 ATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 || | |||| || ||||| || || | ||| | | | |||||||| || Sbjct 42890 ATCG-TCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGC 42832 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 ||||| || || || || ||||| | ||| | ||||| ||||| || | || || Sbjct 42831 AAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 42772 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTC 24258 ||||| ||||| ||||||||||| || || | | || || |||||| || || || | Sbjct 42771 CATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAGAAACTTCCAGAGAAAAATATAC 42713 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGTATCCAC 24317 |||| || ||||| |||| | ||||| || | | | || || ||||| Sbjct 42712 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCAT 42654 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 || ||||||||| || |||||| | | |||||| || || || || |||| ||| | | Sbjct 42653 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAA 42594 Query 24378 TAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 || || ||| ||| ||| || | ||| || |||||||| |||||||||||||| | Sbjct 42593 CGATTCTTCTCA--ACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAG 42536 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 ||||||| || || || || || || |||||||||||| | ||||| | | || | Sbjct 42535 AATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAA 42476 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||||| | |||| | |||| | ||| || || || ||||| || ||||| | Sbjct 42475 CTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGA 42416 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615 | || | || ||| ||||| | |||| | ||||| || ||||| | || | Sbjct 42415 AGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAA 42356 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 ||||| |||| ||| |||||||| | ||||| || || || || || ||||| |||| Sbjct 42355 GATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACA 42296 Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | | |||||| | | | ||||||||||| || ||| Sbjct 42295 TTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593518072235520