Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1740 104 2e-17 seq933 104 2e-17 seq1039 98.7 8e-16 seq322 98.7 8e-16 seq1436 89.7 4e-13 seq1642 86.0 5e-12 seq37 86.0 5e-12 >seq1740 Length=56962 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | |||||||||||||| ||||| || || || Sbjct 21663 CCACCGCGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 21604 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||| ||| || || ||| |||| || | ||||||||| || Sbjct 21603 AGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 21544 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| ||| || | | | | |||||| ||| | Sbjct 21543 ATCCCTTCCTTATCTTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCAACT 21484 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||| || || || | || |||||||| |||||||| Sbjct 21483 TCGAGAGTAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || || |||| ||| || | || || ||||| || || Sbjct 22317 GTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTCCCA 22258 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| ||||||||||||||| || | ||| |||||||| |||||| ||| Sbjct 22257 GCGAAAATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTT 22198 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || ||| |||| || |||||||| || || || || Sbjct 22197 ACATTGTCAATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTCTTCCCTGTCAAGGTC 22138 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 22137 TTCACAAAGATTTGCAT 22121 >seq933 Length=173040 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| || ||||| ||||| || | || |||| ||||| || Sbjct 29209 GTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGGCCATCTTCCAATTGTTTACCA 29150 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| || ||||| || || | ||||||||||| |||||| ||| Sbjct 29149 GCAAAGATAAGCCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCTTTA 29090 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||||| |||| || | ||| ||||| ||||| || || ||| Sbjct 29089 ACGTTGTCTATGGTATCAGAACTCTCCACCTCAAGGGTGATGGTTTTGCCAGTCAATGTT 29030 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 29029 TTCACGAAAATTTGCAT 29013 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || ||||| || || || |||| || | | ||||||| ||| || || Sbjct 30349 GTAGATTCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTACCG 30290 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| ||||||| ||||||||||| ||| | || ||||| || |||||| |||| Sbjct 30289 GCAAAAATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGAATCTTTGCTTTC 30230 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | ||| |||| |||||| ||||| || || | || Sbjct 30229 ACATTATCGATTGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCAGTAAGGGTC 30170 Query 21159 TTGACAAATATTTGCAT 21175 || |||||||||||||| Sbjct 30169 TTCACAAATATTTGCAT 30153 >seq1039 Length=240209 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | |||||||||||||| || || || || || Sbjct 129304 CCACCACGGAGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCA 129363 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| || || ||| |||| || | ||||||||| || Sbjct 129364 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 129423 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| || || | | | | ||||| ||| | Sbjct 129424 ATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACT 129483 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | || || || || |||||||| Sbjct 129484 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 129530 >seq322 Length=397916 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| || ||||| ||||| || | || || | ||||| || Sbjct 312789 GTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGGCCATCTTCTAATTGTTTACCG 312848 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| || ||||| || || | ||||||||||| |||||| ||| Sbjct 312849 GCAAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCTTTA 312908 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||||| |||| || | ||| ||||| || ||||| || ||| Sbjct 312909 ACATTGTCTATGGTATCAGAAATCTCCACCTCAAGGGTGATGGTTTTACCGGTCAATGTT 312968 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 312969 TTCACGAAAATTTGCAT 312985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| || | ||| || ||||| || || ||||| || ||| Sbjct 333183 CCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGCC 333242 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | || |||| ||| ||||| ||| |||| || ||||||||||||| || Sbjct 333243 AGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGGA 333302 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || || || || ||| |||||| | | | | |||||| ||| Sbjct 333303 ATACCCTCTTTATCCTGAATTTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCAACC 333362 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || | || || ||||| |||||||| Sbjct 333363 TCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| || || || ||||| || | || || | ||||| || Sbjct 333898 GTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGGCCATCTTCTAATTGTTTACCG 333957 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||| || ||||| || || | ||||||||||| |||||| ||| Sbjct 333958 GCGAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCCTTGTCTTGGATCTTAGCTTTA 334017 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | |||||| ||||| || | ||| ||||| || || | || ||| Sbjct 334018 ACGTTGTCTATGGTATCAGAACTCTCCGCCTCAAGGGTGATGGTTTTACCCATCAATGTT 334077 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 334078 TTCACGAAAATTTGCAT 334094 >seq1436 Length=88924 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||| || ||||| ||||| || || || Sbjct 7266 CCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGCA 7325 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || || ||||| || || | || || | ||||||||| || Sbjct 7326 AGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGA 7385 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || ||| || | | ||| || ||| || || Sbjct 7386 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATTCTACC 7445 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| |||||||||| ||||| ||||| || ||||| Sbjct 7446 TCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 7492 >seq1642 Length=65368 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || ||||||||||| || |||| || || | || |||||||| || || Sbjct 33963 GTGGACTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTTCCA 33904 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | ||| |||||||| ||| | ||||| ||||| ||||| || Sbjct 33903 GCAAAAATCAATCTTTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGTATCTTGGCCTTT 33844 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | ||| || | ||| |||| |||||| ||||| ||||| | || Sbjct 33843 ACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTC 33784 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 33783 TTCACGAAAATCTGCAT 33767 >seq37 Length=1182629 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| ||||| || ||||| || ||||| | ||||||| ||| || || Sbjct 291743 GTGGACTCCTTCTGAATATTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCT 291802 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||| || ||| | |||||||| || || || ||| Sbjct 291803 GCAAAGATCAACCTCTGCTGATCAGTGGGGATACCTTCCTTATCCTGAATTTTGGCCTTC 291862 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| | |||| |||| |||||||||||| || || || || Sbjct 291863 ACATTATCAATGGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTACCAGTCAAAGTC 291922 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 291923 TTAACAAAAATCTGCAT 291939 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | ||| | ||||||||||| || ||||| || || || Sbjct 292903 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGCA 292962 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || |||| |||| ||| || || || | || || | ||||| ||| || Sbjct 292963 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGGA 293022 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | | ||| || ||| | ||| Sbjct 293023 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACC 293082 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| | ||||| || || |||||||| Sbjct 293083 TCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422118068307584