Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq933 98.7 8e-16 seq1436 93.3 3e-14 seq322 89.7 4e-13 seq37 89.7 4e-13 seq23 87.8 1e-12 seq1039 86.0 5e-12 seq1642 82.4 6e-11 >seq933 Length=173040 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||||||||| ||||||||||| ||| || ||| | Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || || || || ||||| | || |||||| Sbjct 29073 GATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 29132 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || ||||||||||||||| | || | || |||||||| Sbjct 29133 CAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 29192 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || |||||| | ||| | || ||| | || || Sbjct 29193 ATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGG 29239 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| | || || ||||| || |||||||| ||| || ||| || | Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| || | || ||||| Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || ||| | || ||| | ||| | || |||||||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| ||||| ||||| | |||| |||| || Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 29467 >seq1436 Length=88924 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || || |||||||| || |||| ||| || | Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| ||||||||||| | || ||||| Sbjct 7204 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAG 7145 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||||||| | |||| | || ||||| ||| Sbjct 7144 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 7085 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || || || ||||| ||||| |||| Sbjct 7084 ATCCAGAAAGAGTCTACGCTTCATTTGGT 7056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || ||||||| | || || |||||||| || |||| ||| || | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| ||||||||||| | || ||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||||||| | |||| | || ||||| ||| Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || || || || || ||||| | ||| | || || || |||||| Sbjct 38811 ATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGGG 38764 >seq322 Length=397916 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||||||||| || |||||||| ||| || ||| | Sbjct 312985 ATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCT 312926 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || || || || || ||||| | || ||||| Sbjct 312925 GATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAG 312866 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || |||||||| |||||| | || | || |||||||| Sbjct 312865 CAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAAC 312806 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || || |||||| | ||| | || ||| | || || Sbjct 312805 ATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGG 312759 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || |||||||| ||| | || | || || || || || || ||||| Sbjct 333330 AAGCAAAAA-TTCAGGATAAAGAGGGTATTCCTCTGGACCAGCAGAGGCTAATTTTTGCC 333272 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 ||||| || ||||||||| ||| |||| ||||| ||||| || |||||||||||| Sbjct 333271 GGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAATATCCAGAAGGAATCTACT 333212 Query 25233 CTTCACATGGTGTT 25246 || ||| |||| || Sbjct 333211 CTCCACCTGGTTTT 333198 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| | || || ||||| || |||||||| ||| || ||| || | Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| || | || ||||| Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || ||| | || ||| | ||| | || |||||||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| ||||| ||||| | |||| |||| || Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 312531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || |||||| || || ||||||||||| || |||||| | || Sbjct 312436 GATAAGGAAGGAATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAG 312377 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | || |||||||| || || ||||||||||| ||||| ||||| | Sbjct 312376 GATGGAAGAACCCTAGCAGATTACAACATACAGAAGGAATCTACCCTTCATTTGGTGCTT 312317 Query 25248 CGATTACGAGGAGG 25261 |||| |||| || Sbjct 312316 AGATTGAGAGGTGG 312303 >seq37 Length=1182629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | || || ||||| || || ||||| ||| || |||| | || Sbjct 292168 ATGCAAATATTTGTGAAGACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAAAGCTCA 292109 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| || || ||||| || ||| | ||| |||||| Sbjct 292108 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGATCAG 292049 Query 25155 CAAAGACTTATCTTTGC-GGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || | |||||||| || ||||| ||||||||| | || | || |||||||| Sbjct 292048 CAGAGGTTGATCTTTGCTGGATAAACAGTTGGAAGATGGAAGGACCCTTGCGGATTACAA 291989 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||| || ||||| ||||| ||||| Sbjct 291988 TATCCAGAAGGAGTCTACCCTTCA 291965 >seq23 Length=202804 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || ||||||||||| ||| || ||| || | Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | |||| |||||| || || ||||| | || ||||||| Sbjct 5320 GACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAA 5379 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | || ||||| || || |||||| | |||||| | ||| | ||||||||||| Sbjct 5380 CAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAAC 5439 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||| ||||| || || || Sbjct 5440 ATCCAAAAAGAATCCACGCTCCA 5462 >seq1039 Length=240209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| |||||| || || | || |||||||| ||||| | ||| Sbjct 129209 GATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTGATTTTTGCGGGAAAACAGCTCGAA 129150 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| |||| ||||| || || || || || || ||||||||| | ||||| Sbjct 129149 GATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTGTTG 129090 Query 25248 CG 25249 || Sbjct 129089 CG 129088 >seq1642 Length=65368 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || ||||| || || ||||||||| || ||| || Sbjct 33995 ATGCAAATCTTTGTGAAGACGTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 34054 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || || || | || ||||||| Sbjct 34055 GACACCATAGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCGCCAGATCAA 34114 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||| ||| | ||| | || || ||||| Sbjct 34115 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 34174 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| |||||||||||| | || || || Sbjct 34175 ATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCG 34209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410659499385536