Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1210 149 6e-31 seq276 132 5e-26 seq37 129 6e-25 seq23 129 6e-25 seq426 127 2e-24 seq78 127 2e-24 seq1436 120 3e-22 seq147 118 1e-21 seq520 113 5e-20 seq933 109 6e-19 seq1740 104 2e-17 seq322 98.7 1e-15 >seq1210 Length=122563 Score = 149 bits (164), Expect = 6e-31 Identities = 399/604 (66%), Gaps = 11/604 (2%) Strand=Plus/Plus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| ||| ||| || ||||| || |||||||| | || ||| ||||||||| Sbjct 42244 AACCCTGACCGTTTCTGTATGTTCCCAATTCAATACCCTAAAATCTGGGAAATGTACAAA 42303 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA-CACGAGCGA 116712 || ||||| || || |||||||||| ||| || || || | || | || | | | | Sbjct 42304 AAAGCCGAAGCTTCTTTCTGGACCGCCGAAGAAGTCGATTTATCGGAAGATCTTCATC-A 42362 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||| | | | | |||| ||| ||||| || ||| ||||| || ||||| || || Sbjct 42363 CTGGAACAACCTAACCGACGGCGAACGCCACTTTATCTCACACGTTCTTGCCTTCTTTGC 42422 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 ||| ||||||||||||| |||||||| | | | ||| | || || || || Sbjct 42423 CGCTTCCGACGGCATCGTCTTGGAGAATCTTGCAGGAAGATTCATGAAAGAAGTTCAAGT 42482 Query 116833 GGCCGAGGCGCGGTGC-TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 | ||||||| |||| |||||||| || |||||||| || ||||| | || || |||| Sbjct 42483 CTCAGAGGCGC-GTGCTTTCTACGGATTCCAGATCGCAATCGAGAATATTCATTCTGAAA 42541 Query 116892 TGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGA 116951 ||||| | | || || || || | ||| | |||||| |||||||| Sbjct 42542 TGTATAGTCTCTTGATTGAGACTTATATCAATGATTCAGTTGAGAAGAATCGTTTGTTTC 42601 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 | || || || ||||| || || | | | |||| || || ||||| || ||||||| Sbjct 42602 ATGCAATTGAAACGATTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGAAATGGATCG 42661 Query 117012 --CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 | | || | || | || | | || || || || || || || | Sbjct 42662 ATTCATCTGA-----TTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTAT 42716 Query 117070 CTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 || || || || |||||| || || || ||||| || ||||| || | ||||| || Sbjct 42717 ATTTTTCTCTGGAAGTTTCTGTGCAATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGG 42776 Query 117130 CCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | ||||| |||||||| || || | ||||| || || ||||| || ||||| || Sbjct 42777 TTTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGACTTCATTGTGATTTTGCTTG 42836 Query 117190 TTTG 117193 |||| Sbjct 42837 TTTG 42840 >seq276 Length=436033 Score = 132 bits (146), Expect = 5e-26 Identities = 163/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 ||||||| | |||| || ||||| ||||| |||||||| || || || ||| |||| || Sbjct 192247 CTCCGAAGA-TGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATAACCCTCGAGGTT 192305 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 ||| | | || | | | | |||| |||||| ||||| | ||||| || || || || Sbjct 192306 GAATCTTCTGATACCATCGACAACG-TCAAGGCCAAAATCCAAGACAAGGAAGGAATTCC 192364 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 |||| || ||||||||||||| ||| || |||||||| || |||| ||||| || Sbjct 192365 ACCGGATCAACAACGACTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTTGC 192424 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||||||||| | || || || || || Sbjct 192425 CGACTACAATATCCAGAAGGAATCAACTCTTCACCTTGT 192463 >seq37 Length=1182629 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || || ||| | | Sbjct 293129 ATGCAAATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 293070 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | || || | ||||| || || || || |||| || Sbjct 293069 GACACCATCGACAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCA 293011 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || ||| |||| |||| | || || || ||||| Sbjct 293010 GCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAA 292951 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||||||| ||||| || Sbjct 292950 CATCCAGAAGGAGTCCACGCTTCATCTTGT 292921 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || || | || || || ||||| ||| | || || ||| | | Sbjct 292168 ATGCAAATATTTGTGAAGACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAAAGCTCA 292109 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| || ||| | || ||| Sbjct 292108 GACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGATCAG 292049 Query 40810 CAACGACTCATCTACGCGGGC-AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | | |||| || || |||||| |||| || | | ||||| || ||||| Sbjct 292048 CAGAGGTTGATCTTTGCTGGATAAACAGTTGGAAGATGGAAGGACCCTTGCGGATTACAA 291989 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || ||||| ||| |||| |||||||| || Sbjct 291988 TATCCAGAAGGAGTCTACCCTTCATCTTGTGCTGCGTTTGAGGGGTGG 291941 >seq23 Length=202804 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||||||||| ||| | || || ||| || || Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||||| ||||| || || || || | || || Sbjct 5320 GACACCATCGACAACG-TCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 5378 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| || ||||| || || || | || || || ||| ||||| Sbjct 5379 ACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAA 5438 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || ||||||| ||||| || Sbjct 5439 CATCCAAAAAGAATCCACGCTCCATCTCGT 5468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || ||||||||||| |||| |||||| | | Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || || || || || | || || Sbjct 5548 GACACAATCGACAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCA 5606 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || |||||||| || || | | || || || || || Sbjct 5607 GCAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAA 5666 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || | || || ||||| || Sbjct 5667 TATTCAGAAAGAATCTACACTTCATCTTGT 5696 >seq426 Length=522792 Score = 127 bits (140), Expect = 2e-24 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 ||||||| | |||| || ||||| ||||| || ||||| || || || ||| |||| || Sbjct 162826 CTCCGAAGA-TGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTT 162768 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 ||| | | || | | | | |||| |||||| ||||| | ||||| || || || || Sbjct 162767 GAATCTTCTGATACCATCGACAACG-TCAAGGCCAAAATCCAAGACAAGGAAGGAATTCC 162709 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 |||| || ||||||||||||| ||| || |||||||| || |||| ||||| || Sbjct 162708 ACCGGATCAACAACGACTCATCTTCGCAGGAAAACAGCTTGAAGACGGCCGCACTCTTGC 162649 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||||||||| | || || || || || Sbjct 162648 CGACTACAATATCCAGAAGGAATCAACTCTTCACCTTGT 162610 >seq78 Length=963227 Score = 127 bits (140), Expect = 2e-24 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 ||||||| | |||| || ||||| ||||| || ||||| || || || ||| |||| || Sbjct 597905 CTCCGAAGA-TGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTT 597847 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 ||| | | || | | | | |||| |||||| ||||| | ||||| || || || || Sbjct 597846 GAATCTTCTGATACCATCGACAACG-TCAAGGCCAAAATCCAAGACAAGGAAGGAATTCC 597788 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 |||| || ||||||||||||| ||| || |||||||| || |||| ||||| || Sbjct 597787 ACCGGATCAACAACGACTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTTGC 597728 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||||||||| | || || || || || Sbjct 597727 CGACTACAATATCCAGAAGGAATCAACTCTTCACCTTGT 597689 Score = 102 bits (112), Expect = 8e-17 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 40682 TCCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 |||| ||| ||||| || ||||| ||||| || || || || || || ||| |||| || Sbjct 604867 TCCGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTT 604808 Query 40741 GAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCC 40800 || | | |||| | | | |||| | || || | ||||| || || || || Sbjct 604807 GAGTCTTCTGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCA 604748 Query 40801 GCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 40860 | ||||||||||| ||||||| ||| || || ||| | || || | ||||| ||| | Sbjct 604747 CCTGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTCGCC 604688 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||||||| | || || || || || Sbjct 604687 GACTACAACATCCAGAAGGAATCAACTCTTCACCTTGT 604650 >seq1436 Length=88924 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||||||||| ||| | || || ||| || | Sbjct 7492 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCT 7433 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | ||||| || || || || | ||||| Sbjct 7432 GACACCATCGACAACG-TCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCA 7374 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || ||||| || || |||| ||||| || ||| ||||| Sbjct 7373 GCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAA 7314 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || |||| || ||||| || Sbjct 7313 CATCCAAAAAGAATCCACACTCCATCTCGT 7284 Score = 111 bits (122), Expect = 2e-19 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||||||||| ||| | || || ||| || || Sbjct 39218 ATGCAGATCTTCGTGAAAACCCT-ACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 39160 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | ||||| || || || || | ||||| Sbjct 39159 GACACCATCGACAACG-TCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGACCA 39101 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| || ||||| || || |||| || || || ||| ||||| Sbjct 39100 ACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAA 39041 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || |||| || || || || Sbjct 39040 CATCCAAAAAGAATCCACACTCCACCTCGT 39011 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||||||||| |||| || ||| || || Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || ||||| || ||||| | || || Sbjct 38931 GACACAATCGACAACG-TGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCA 38873 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || || || || |||| || | | | || || || || || Sbjct 38872 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 38813 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| ||||||| ||| ||||| | || ||| | || || Sbjct 38812 TATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || ||||||||||| |||| || ||| || | Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || ||||| || || || | || || Sbjct 7204 GACACAATCGACAACG-TGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCA 7146 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || || || || |||| || | | | || || || || || Sbjct 7145 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 7086 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| ||| | ||||| ||| Sbjct 7085 TATCCAGAAAGAGTCTACGCTTCAT 7061 >seq147 Length=403342 Score = 118 bits (130), Expect = 1e-21 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 ||||||| | ||||||| ||||| ||||| || ||||| || || || ||| |||| || Sbjct 352528 CTCCGAAGA-TGCAAATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTT 352470 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 | | | | || | | | | |||| ||||||| ||||| | |||| || || || || Sbjct 352469 GGATCTTCTGATACCATCGACAACG-TCAAGGACAAAATCCAATACAAGGAAGGAATTCC 352411 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 |||| || |||| |||||||| |||||| |||||||| || ||||| | | || Sbjct 352410 ACCGGATCAACAACAACTCATCTTCGCGGGAAAACAGCTTGAAGACGACAGGGCTCTTGC 352351 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||||||||| | || || || || || Sbjct 352350 CGACTACAATATCCAGAAGGAATCAACTCTCCACCTTGT 352312 >seq520 Length=294854 Score = 113 bits (124), Expect = 5e-20 Identities = 390/605 (64%), Gaps = 9/605 (1%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| ||| ||| || ||||| || |||||||| | || ||| ||||||||| Sbjct 262685 AACCCTGACCGTTTCTGTATGTTCCCGATTCAATACCCTAAAATTTGGGAAATGTACAAA 262626 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTC-CAAGGACACGAGCGA 116712 || ||||| || || |||||||| | || || || || || || |||| | | | Sbjct 262625 AAAGCCGAAGCTTCATTCTGGACAGCAGAAGAAGTCGATCTCTCACAAGATCTTCCTC-A 262567 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||| | | | | |||| ||| || || |||||| ||||| || || || || || Sbjct 262566 CTGGAACAACCTAACCGACGGCGAACGTCACTTCATCTCACACGTTCTTGCTTTCTTTGC 262507 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 |||| |||||| || ||| |||||||| | || | ||| | || || || || Sbjct 262506 CGCCTCCGACGGTATAGTCTTGGAGAATCTTGCCGGAAGATTCATGAAAGAAGTTCAAGT 262447 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | ||||| || ||| ||||| || |||||||| || || ||| | || || ||||| Sbjct 262446 CTCTGAGGCACGTGCCTTTTACGGTTTCCAGATCGCGATTGAAAACATTCATTCTGAAAT 262387 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAA 116952 |||| | | || || || || | ||| || ||| ||||| || | Sbjct 262386 GTATAGTCTCTTGATTGAGACTTATATCAATGATTCTATCGAAAAGAATCGTTTATTTCA 262327 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG- 117011 || || || ||||| || || | |||| || || ||||| || ||||||| Sbjct 262326 TGCAATTGACACGATTCCTTGTATTGCCAAGAAAGCTGATTGGGCTATGAAATGGATCGA 262267 Query 117012 -CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | || | || | || | | || || || || || || || | Sbjct 262266 TTCATCTGA-----TTCATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATA 262212 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 || || || || |||||| | || |||||||| || ||||| || | ||||| || Sbjct 262211 TTTTTCTCCGGTAGTTTCTGTTCAATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGT 262152 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 | ||||| |||||||| || || | ||||| ||||| ||||| || ||||| ||| Sbjct 262151 TTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGTCTTCATTGTGATTTTGCTTGT 262092 Query 117191 TTGCT 117195 || || Sbjct 262091 TTACT 262087 >seq933 Length=173040 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || ||||||||||||||| | || || || | Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || | | | ||||| || || || || | || || Sbjct 29073 GATACCATAGACAACGTTAAAGCTAAGA-TCCAAGACAAGGAAGGGATTCCACCAGATCA 29131 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | || |||| || || ||||| |||| || | |||||||| || ||||| Sbjct 29132 GCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAA 29191 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||| |||| || || || ||| |||| || ||||||||| Sbjct 29192 CATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGC 29240 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || | || || |||||||||||| | || || ||| || || Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || || | ||||||||||||||||| | || ||| Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || || || || || | | ||||| || |||||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||| | ||| | | ||||| || || Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 29467 >seq1740 Length=56962 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || |||||||| || || | || || || | | Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| ||||| | |||||| Sbjct 43165 GACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 43106 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||| | || || |||||| |||| || | || ||| | ||| |||||| Sbjct 43105 CAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAAC 43046 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| || | || ||||||||||| Sbjct 43045 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGCGG 42999 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || ||||| || || ||||||||| | || || || | | Sbjct 21665 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCA 21724 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||||||||| ||||| | |||||| Sbjct 21725 GACACCATAGACAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCACCAGACCAG 21784 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | || || || ||||| || || | | ||| | || |||||| Sbjct 21785 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAAC 21844 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || |||| || ||||| || ||||| Sbjct 21845 ATCCAGAAAGAATCCACCCTTCATCTTGTCTTGCG 21879 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || |||||||||| ||||||| | ||| || || ||||| || Sbjct 22214 GACAAGGAGGGCATTCCTCCGGACCAGCAGAGACTCATTTTCGCTGGGAAGCAGCTTGAA 22273 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | || ||| | || ||||||||||||||||| |||| || ||||| || | Sbjct 22274 GATGGCCGTACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTT 22333 Query 40903 CGCTTGAGGGGCGG 40916 || |||||||| || Sbjct 22334 CGTTTGAGGGGAGG 22347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || |||||||| || |||| || || | Sbjct 21437 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACCATTACTCTCGAAGTTGAGAGTTCT 21496 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | || | || |||| || || || || ||||| | |||||| Sbjct 21497 GATACCATAGACAATGTTAAAGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAG 21556 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || || || ||| |||| || | ||| ||||| || |||||| Sbjct 21557 CAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAAC 21616 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||||| |||| || ||| | ||| Sbjct 21617 ATCCAAAAGGAGTCCACCCTCCATTTGGTG 21646 >seq322 Length=397916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || | || || |||||||||||| | || || ||| || || Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || || | ||||||||||||||||| | || ||| Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || || || || || | | ||||| || |||||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||| | ||| | | ||||| || || Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 312531 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || |||||||||||| | || || || | Sbjct 312985 ATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCT 312926 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | || | || || | ||||| || || || || | || ||| Sbjct 312925 GATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAG 312866 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || ||||| | || || | |||||||| || |||||| Sbjct 312865 CAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAAC 312806 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| |||||| |||| || || || ||| |||| || ||||||||| Sbjct 312805 ATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGC 312758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || | || ||||||| |||||| | || || ||| || | Sbjct 333866 ATGCAGATATTCGTTAAGACCTTGACTGGCAAAATTATCACCCTTGAGGTTGAATCCTCA 333807 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || || | ||||||||||||||||| | || ||| Sbjct 333806 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 333747 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || || || || || | | ||||| || |||||| Sbjct 333746 CAGTGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 333687 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||| | || | | ||||| || || Sbjct 333686 ATCCAGAAGGAATCTACCCTTCATTTGGTTCTTAGATTGAGAGGTGG 333640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515042582858240