Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq322 156 6e-33 seq933 150 3e-31 seq1740 125 1e-23 seq23 114 2e-20 seq1436 109 8e-19 seq1039 102 1e-16 seq1642 96.9 5e-15 seq426 96.9 5e-15 >seq322 Length=397916 Score = 156 bits (172), Expect = 6e-33 Identities = 180/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| | ||||| |||||||| ||| ||||| |||| || Sbjct 312074 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTC 312015 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| ||| |||| | ||| || ||||| ||||| || ||||| || || |||| Sbjct 312014 A-GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATC 311956 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| || || ||| | |||||| | |||| | | ||||||| Sbjct 311955 AGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTATA 311896 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || ||||| ||||| ||| | ||||||||||| ||| | || || ||||| ||| || Sbjct 311895 ACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGGTATGCAAATTT 311836 Score = 140 bits (154), Expect = 5e-28 Identities = 178/241 (74%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATA-ACTATAGAGATTGA-AGCA 124595 |||||| || ||| | ||||| ||||||| || ||||| ||| ||||| |||| || Sbjct 333639 AATGCAGATTTTTGTCAAGACTTTAACAGGAAAGACTATTTACTTTAGAGGTTGAGAGTT 333580 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | ||||| || |||| | ||| || ||||| ||||| || || || || || ||| Sbjct 333579 CA-GATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGAT 333521 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || |||||||| |||||||| |||||| | |||||| | |||| | | |||||| Sbjct 333520 CAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTTGCTGATTAT 333461 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || ||||| ||||| ||| | ||||||||||| ||| | | || ||||| ||| | Sbjct 333460 AACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCATGGGGGTATGCAAATT 333401 Query 124776 T 124776 | Sbjct 333400 T 333400 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || |||||| | ||| |||| Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||| |||||||| ||||| || | || || Sbjct 333349 GATACTATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCAG 333290 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || || || || || ||| || | || | | ||||||||| Sbjct 333289 CAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAAT 333230 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | || ||||||| | | || ||||| || Sbjct 333229 ATCCAGAAGGAATCTACTCTCCACCTGGTTTTGAGGCTTCGTGGTGGCAT 333180 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| || ||||| || ||||||||||| ||||||||||| || || || ||| Sbjct 334010 AAGATCCAAGACAAGGAAGGGATTCCACCTGATCAGCAAAGGCTTATCTTCGCCGGTAAA 333951 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| | || || | | |||||| || || ||||| || || || | || Sbjct 333950 CAATTAGAAGATGGCCGCACCCTTGCAGATTACAACATCCAAAAGGAGTCCACCCTTCAC 333891 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || ||| |||||||||| Sbjct 333890 CTTGTGTTGCGGTTAAGAGGTGGTAT 333865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || ||||| || || | ||| | || | Sbjct 312985 ATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCT 312926 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || || ||||| || ||||| || ||||||||||| Sbjct 312925 GATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAG 312866 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || ||||||||||| ||| | || || | | ||||| || Sbjct 312865 CAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAAC 312806 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| || || || Sbjct 312805 ATCCAAAAGGAGTCCAC 312789 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || |||||| | ||| |||| Sbjct 311845 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCC 311786 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || |||||||||||||| ||||| || || || || Sbjct 311785 GACACTATTGACAATGTGAAAGCAAAGATTCAAGATAAAGAGGGTATTCCTCCAGACCAG 311726 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 || ||||| |||||||| || || || || || ||| |||| || | | ||||||| Sbjct 311725 CAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATA 311668 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/156 (72%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || ||||| || || | ||| | ||| | Sbjct 333181 ATGCAAATATTTGTGAAGACCCTTACTGGCAAT----TACCT-TGGAGGTGGAAAGCTCT 333127 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| |||| | ||| || || || ||||| || ||||| || || || ||| Sbjct 333126 GATACAATCGATAATGTGAAAGCAAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAA 333067 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 || |||||||||||||| || || || || |||||| Sbjct 333066 CAGAGGCTTATTTTTGCTGGTAAGCAGTTGGAGGAT 333031 >seq933 Length=173040 Score = 150 bits (166), Expect = 3e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| | ||||| || ||||| ||| | ||| |||| || Sbjct 29696 AATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTTGAGAGTTC 29755 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| ||| |||| | ||| || ||||| ||||| |||||||| || || |||| Sbjct 29756 A-GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCCGATC 29814 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| || || ||| | || ||| || | ||| | | ||||||| Sbjct 29815 AGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTATA 29874 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || ||||| ||||| ||| | ||||||||||| ||| | || || ||||| ||| || Sbjct 29875 ACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGGTATGCAAATTT 29934 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || ||||| || | ||| | ||| | Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| |||| | ||| || ||||||||||| || ||||| || || || || Sbjct 30213 GATACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 30272 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| || || || || |||||| |||| || || | |||||| ||| Sbjct 30273 CAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 30332 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| |||||||| || | || | ||| | ||| | || ||||| Sbjct 30333 ATTCAGAAAGAATCTACCCTCCACCTTGTTCTTCGTCTCCGTGGTGG 30379 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || ||||| | ||| |||| Sbjct 29925 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACATTGGAGGTTGAGAGTTCC 29984 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || |||||||| |||||||| ||||| || || || || Sbjct 29985 GATACAATTGACAATGTGAAGGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAG 30044 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || || || || || ||| |||| || | | ||||||||| Sbjct 30045 CAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATAAT 30104 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| |||||||| |||||||| | | || ||||| || Sbjct 30105 ATCCAGAAGGAATCTACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCAT 30154 Score = 89.7 bits (98), Expect = 8e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || |||||||| || || | ||| | || | Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| || || ||||| || ||||| || ||||| ||||| Sbjct 29073 GATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 29132 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || |||||||| || ||| | || || | | ||||| || Sbjct 29133 CAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 29192 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| || || || Sbjct 29193 ATCCAAAAGGAGTCCAC 29209 >seq1740 Length=56962 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||||||||| || ||| | ||| |||| ||| | Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| |||| || |||||||| || || ||||| || || || || Sbjct 43165 -GACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCA 43107 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||| |||||||| || || ||| | ||||| || | ||||| || Sbjct 43106 GCAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAA 43047 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| | || | ||||| | || ||||| Sbjct 43046 CATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGCGGTAT 42996 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || ||| | || |||| | Sbjct 21437 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACCATTACTCTCGAAGTTGAGAGTTCT 21496 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || ||||||||||| ||||| || ||||| || || Sbjct 21497 GATACCATAGACAATGTTAAAGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAG 21556 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| ||||| || || |||||| | || || | | ||||| || Sbjct 21557 CAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAAC 21616 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | |||||||| | ||| | || |||||||| Sbjct 21617 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGCGGTGGTAT 21666 Score = 100 bits (110), Expect = 4e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || |||||| | ||| |||| ||| | Sbjct 21893 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAGAGCTCA 21952 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || ||||| || || || ||||| || || ||||| Sbjct 21953 -GACACTATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCAGATCA 22011 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||| | |||||||| || ||||| || || ||| | || || || | ||||| || Sbjct 22012 ACAAAGGTTGATTTTTGCCGGGAAACAGTTGGAAGATGGCCGGACCTTGGCTGATTACAA 22071 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 || || || ||||| || | ||| | || | ||||| Sbjct 22072 CATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTT 22110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || | || | ||| | || Sbjct 43786 ATGCAAATCTTTGTGAAGACTCTCACTGGAAAGACCGTCACCCTTGAGGTAGAGAGTTCG 43727 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| | || || |||||||| || |||||||| ||||| || ||| Sbjct 43726 GATACCATAGATAATGTCAAGGTCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 43667 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| |||||||| |||||||| | || ||| | | ||||||| ||||| || Sbjct 43666 CAAAGGCTAATTTTTGCTGGAAAACAGCTTGAAGATGGCAGGACATTAGCTGATTACAAC 43607 Query 124719 ATTCAAAAAGAATCAAC 124735 || || || ||||| || Sbjct 43606 ATCCAGAAGGAATCCAC 43590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | | | | || || ||||| ||| | ||| | || |||| || | Sbjct 44014 ATGCAAATATTTGTTACGGCCCTCACTGGCAAGACTGTTACTCTCGAAGTTGAGAGTTCA 43955 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| | ||| | || || ||||||||||| ||||| || | | | || || Sbjct 43954 -GATACCGTAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCTATCCGACCA 43896 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || |||||||| ||||| || | |||||| |||| || | | ||||| || Sbjct 43895 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTACAA 43836 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||||||||||| ||| | || ||||| || Sbjct 43835 CATCCAAAAGGAGTCCACCCTCCATTTGGTTTTCCGTCTCCGTGGTGGGAT 43785 >seq23 Length=202804 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | || || ||||| |||||||| ||||| ||||| | ||| | Sbjct 5257 ACCATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCC 5316 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || || | ||| ||||||||||| || ||||| || ||||| ||| Sbjct 5317 TCCGACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGAT 5376 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | || || || || ||||||||| | || ||| | || || | | ||||| Sbjct 5377 CAACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTAC 5436 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| || | ||| | ||| | ||| | || || || || Sbjct 5437 AACATCCAAAAAGAATCCACGCTCCATCTCGTTCTCCGTCTCCGCGGAGGCAT 5489 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| || ||||| || || | || | ||| || Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| ||||||||||| ||||| || ||||||||||| Sbjct 5548 GACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCAG 5607 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || ||||| | |||||| | | || | | ||||||||| Sbjct 5608 CAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAAT 5667 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| |||||||| || | ||| | ||| | | | || |||||| Sbjct 5668 ATTCAGAAAGAATCTACACTTCATCTTGTTCTTAGACTCCGTGGTGGT 5715 >seq1436 Length=88924 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| || ||||| || || | || ||||| | | Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| ||||| ||||||||||| || || |||||||| Sbjct 7204 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAG 7145 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || |||||||| || ||||| || ||| | |||| | | ||||||||| Sbjct 7144 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 7085 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | ||||||||| | | || || ||||| || Sbjct 7084 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGGAAT 7035 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | || || || || || ||| | ||| |||| Sbjct 7037 AATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATTACTCTTGAGGTTGAGAGTTC 6978 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || ||| |||||||| || || ||||| ||||||||||| Sbjct 6977 TGATACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATTCCACCTGATCA 6918 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | || ||||| || ||||| | |||||| | || || | | |||||||| Sbjct 6917 GCAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGGACTCTTGCTGATTATAA 6858 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| |||||||| || Sbjct 6857 TATTCAGAAAGAATCTAC 6840 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| |||||||| ||||| ||||| | ||| | | Sbjct 7492 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCT 7433 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||| ||||| || ||||| || |||||||| || Sbjct 7432 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCAG 7373 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || ||||||||| | || || | || || | | ||||| || Sbjct 7372 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAAC 7313 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | ||| | ||| | ||| | || || || || Sbjct 7312 ATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGCAT 7263 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || || ||||| ||| | ||| | || | Sbjct 38763 ATGCAGATTTTTGTGAAGACGTTGACGGGGAAGACTATTACTCTTGAGGTGGAGAGTTCT 38704 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || ||| ||||||||||| || || || ||||||||||| Sbjct 38703 GATACTATTGATAATGTGAAGGCGAAGATTCAAGATAAGGAGGGGATTCCACCTGATCAG 38644 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || ||||| || ||||| | |||||| | | || | | ||||||||| Sbjct 38643 CAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAAT 38584 Query 124719 ATTCAAAAAGAATCAACT 124736 ||||| |||||||| ||| Sbjct 38583 ATTCAGAAAGAATCTACT 38566 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| || ||||| || || | || ||||| | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || ||| ||||| ||||||||||| || || |||||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || |||||||| || ||||| || ||| | |||| | | ||||||||| Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | ||||| || | || || || || || || Sbjct 38811 ATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGGGAT 38762 >seq1039 Length=240209 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||||||||||||||| || || ||||| || ||| | |||||||| |||||| Sbjct 129218 AAGATACAAGATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTGATTTTTGCGGGAAAA 129159 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | |||| | | |||||||| || || ||||| |||||| | || Sbjct 129158 CAGCTCGAAGATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCAACTCTTCAC 129099 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 129098 CTTGTGTTGCGTCTTCGTGGTGGTAT 129073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | ||||| || || ||||| || || ||| | || |||| || | Sbjct 129530 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 129471 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || ||||||||||| ||||| || ||||| || || Sbjct 129470 -GATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCA 129412 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || |||||||| ||||| || | ||||| | || || | | ||||| || Sbjct 129411 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCTGATTACAA 129352 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || || || | |||||||| | ||| | || |||||||| Sbjct 129351 TATCCAAAAGGAGTCCACGCTCCATTTGGTGCTCCGTCTCCGTGGTGGTAT 129301 >seq1642 Length=65368 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||||||||||||||| || || ||||| || ||| | |||||||||||||| Sbjct 54246 AAGATTCAAGATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTAATTTTTGCAGGAAAG 54305 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | |||| | | |||||||| || || ||||| || || | || Sbjct 54306 CAGCTCGAAGATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCTACCCTTCAC 54365 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||| | || |||||||| Sbjct 54366 CTTGTCTTGCGTCTTCGTGGTGGTAT 54391 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || ||||| || | ||| | || |||| || | Sbjct 32643 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACCGTTACTCTTGAAGTTGAGAGTTCA 32702 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || |||||||| || |||||||| |||||||| || Sbjct 32703 -GATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCA 32761 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACA 124684 ||||||||| |||||||| |||||||| Sbjct 32762 ACAAAGGCTGATTTTTGCTGGAAAACA 32788 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || || || ||||| || | ||| | || ||| | Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| |||| || || || || ||||||||||| || || || || Sbjct 33827 -GACACTATTGACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCA 33885 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | |||||||| ||||| || | || ||| | || || || | |||||||| Sbjct 33886 GCAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAA 33945 Query 124718 TATTCAAAAAGAATCAAC 124735 ||||| ||||| || || Sbjct 33946 CATTCAGAAAGAGTCCAC 33963 >seq426 Length=522792 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || || || ||||| | ||| ||||| | | Sbjct 162818 ATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTTGAATCTTCT 162759 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || ||||| ||||| || ||||| || ||||| |||||| Sbjct 162758 GATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGATCAA 162699 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || ||||||||||| | || || | || || | | || || ||| Sbjct 162698 CAACGACTCATCTTCGCAGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTACAAT 162639 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || || ||||||||| | || | ||| | ||| | || |||||| ||| || Sbjct 162638 ATCCAGAAGGAATCAACTCTTCACCTTGTTCTCCGTCTCCGTGGTGGTGCTAAGAA 162583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755197029683200