Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1436 120 5e-22 seq23 116 6e-21 seq1258 102 1e-16 seq1039 98.7 1e-15 seq933 95.1 2e-14 seq1642 89.7 8e-13 seq319 89.7 8e-13 seq1740 86.0 9e-12 seq322 86.0 9e-12 >seq1436 Length=88924 Score = 120 bits (132), Expect = 5e-22 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||| ||||| ||||||||||| | ||||||||| | ||| || Sbjct 7056 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCATCTTCC 7115 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 ||||| || || ||||| ||||||| |||||||| |||||||||||||||||||| || Sbjct 7116 AATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 7175 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || || || ||| ||||| |||||||| ||||| Sbjct 7176 ATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAACTTCGAGTGTGATGGTTTTT 7235 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||| ||||| | ||| |||||||| Sbjct 7236 CCAGTTAGGGTTTTGACGAAGATTTGCAT 7264 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| | || || ||||| ||||||||||| | ||||||||| | ||| || Sbjct 38783 ACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCATCTTCC 38842 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||| ||||||| |||||||| ||||| |||||||||||||| || Sbjct 38843 AATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGGATTCCTTCTTTATCCTG 38901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 |||||||||||| ||||||||||| | |||||| || | ||| || | ||||| || Sbjct 38566 AGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCCTCAAGCTGTTTACC 38625 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||||| |||||||| || ||||| || || |||||||| Sbjct 38626 GGCAAAGATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCTTG 38673 >seq23 Length=202804 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| | || | ||| | ||||||||||| ||||||||||| | | Sbjct 5714 CCACCACGGAGTCTAAGAACAAGATGAAGTGTAGATTCTTTCTGAATATTATAATCAGCA 5655 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | ||||| |||||||| ||||||| ||||||||| || ||| Sbjct 5654 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGTGGA 5595 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| || ||||| ||| ||| Sbjct 5594 ATCCCTTCCTTATCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCTGATGATTCGACT 5535 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| ||||| || |||| ||||| | ||| |||||||| Sbjct 5534 TCGAGTGTGATGGTTTTTCCGGTTAGGGTTTTGACGAAGATTTGCAT 5488 >seq1258 Length=116449 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 10454 AGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGA 10513 ||| || ||||| | ||| || || | | ||||||| |||| |||||||| ||||| Sbjct 53487 AGCGCCGAGATCAGGTTTGACTTGGAAACATTCTATTGATGTTGGTGCTGGAGTGATTGA 53546 Query 10514 CGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTAT 10573 | |||||||||||| ||| || || ||| | |||||||||||| ||| |||||| Sbjct 53547 TGCTGATTATAGAGGACCTGTTGGGGTTATACTGTTTAATCATTCTGATGTTGATTTTGA 53606 Query 10574 AATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATT 10619 | | || | || |||||||| |||| |||||| ||| || ||| Sbjct 53607 AGTGAAAATTGGTGATAGAATTGCTCAGTTAATAATTGAGAAGATT 53652 >seq1039 Length=240209 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || || | || | ||| || ||||| || |||||||| | Sbjct 129076 CCACCACGAAGACGCAACACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCAGCC 129135 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || | |||||||| ||||||||||| || |||||||| || ||| Sbjct 129136 AGGGTTCTGCCATCTTCGAGCTGTTTTCCCGCAAAAATCAACCTCTGCTGATCTGGGGGA 129195 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 129196 ATACCTTCTTTATCTTG 129212 >seq933 Length=173040 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || ||||| || ||||||||||| || ||||||||||| | Sbjct 30151 CCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCC 30092 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || || || || |||||||| | || ||||| || |||||| Sbjct 30091 AGAGTACGACCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGAGGA 30032 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 30031 ATACCCTCTTTATCCTG 30015 >seq1642 Length=65368 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||| ||||| || |||||||| | || ||||||| ||| || | || ||||| Sbjct 54358 GTAGACTCTTTCTGGATGTTATAATCAGCCAGGGTTCTGCCATCTTCGAGCTGCTTTCCT 54299 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 54298 GCAAAAATTAACCTCTGCTGATCTGGGGGAATACCTTCTTTATCTTG 54252 >seq319 Length=603634 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || || | ||||| || | || ||||| || ||| |||||||| Sbjct 440685 GTTCCACCCCTGAGCCTCAGGACCAAGTGAAGTGTTGATTCCTTTTGTATGTTATAATCA 440744 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | || ||| || | || || |||||||||||||| || ||||| || ||| Sbjct 440745 GCAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCGGGA 440804 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 440805 GGGATACCTTCCTTGTC 440821 >seq1740 Length=56962 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | || |||||||| || || ||||| | Sbjct 21891 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGCT 21832 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || |||| ||| || | || ||||||||||||||||| |||||||| || || || Sbjct 21831 AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 21772 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| ||||| ||||| Sbjct 21771 ATTCCCTCTTTGTCTTG 21755 >seq322 Length=397916 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || |||| || | ||||||||| || ||||||||||| | Sbjct 333183 CCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGCC 333242 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || || || || |||||||| | || ||||| ||| ||||| Sbjct 333243 AGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGGA 333302 Query 146171 ATTCCTTCTTTATCTTG 146187 || || |||||||| || Sbjct 333303 ATACCCTCTTTATCCTG 333319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743271519150080