Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1436 98.7 6e-16 seq322 93.3 3e-14 seq78 91.5 1e-13 seq933 89.7 3e-13 seq1740 86.0 4e-12 seq1039 84.2 1e-11 >seq1436 Length=88924 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || |||||||| |||| || ||| |||| || | || || || ||||| Sbjct 7301 TTCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAA 7360 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||||| ||||||||||| || | | |||||||| || ||| ||||| | | Sbjct 7361 GATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGT 7419 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | ||||| || || | || |||||||||||||| || ||||||| Sbjct 7420 TGTCGATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCA 7479 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 7480 CAAAGATCTGCAT 7492 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || |||||| || |||||||| |||| Sbjct 38993 CCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGCA 39052 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | || || || ||||| ||||| ||||| ||||| || Sbjct 39053 AGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGGA 39112 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | | | | || | |||| ||||| || Sbjct 39113 ATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTAC 39171 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || |||||||||||||| || |||||||| ||||||||||| Sbjct 39172 CTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTCACGAAGATCTGCAT 39218 >seq322 Length=397916 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| |||||||| | |||| ||| ||||| || || || || | | Sbjct 333183 CCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGCC 333242 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||||||||| || ||||| |||| ||||||||| | || Sbjct 333243 AGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGGA 333302 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || || ||||||||| | || | | || | |||| || || Sbjct 333303 ATACCCTCTTTATCCTGAAT-TTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCAAC 333361 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || || || ||||| || ||||| Sbjct 333362 CTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 >seq78 Length=963227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| ||||||||||||| || ||| | || Sbjct 604647 AGAACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCATCT 604706 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || |||||||| || ||||| ||||| || |||||||| || | | |||||||| Sbjct 604707 TCTAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCT 604766 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | || | || || || || | || || || Sbjct 604767 TGGATC-TTGGCTTTGACATTGTCGATTGTGTCAGAAGACTCAACCTCGAGGGTTATCGT 604825 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 604826 CTTCCCTGTTAGGGTTTTCACGAAGATCTGCATC 604859 >seq933 Length=173040 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| |||| ||| |||||| ||| ||||| || || || || | | Sbjct 30151 CCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCC 30092 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||||||||| || || ||||| |||| ||||||||| || Sbjct 30091 AGAGTACGACCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGAGGA 30032 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| || || || ||| ||| | || | | || | ||||| || || Sbjct 30031 ATACCCTCTTTATCCTGAATTTTTGCCTTCACATTGTCAATTGTATCGGAACTCTCAACC 29972 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || || || ||||| || ||||| Sbjct 29971 TCCAATGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 29925 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||||||||| || ||||| || | || ||| | || Sbjct 30364 AGAACAAGGTGGAGGGTAGATTCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCC 30305 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || ||||| |||| ||||||||| ||| | | |||||| || Sbjct 30304 TCCAACTGCTTACCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCT 30245 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| |||||||| | || | || | ||| | ||| || |||| || || || Sbjct 30244 TGAATC-TTTGCTTTCACATTATCGATTGTATCAGAGCTTTCCACCTCCAAGGTAATAGT 30186 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || |||||||| || ||||| Sbjct 30185 CTTCCCAGTAAGGGTCTTCACAAATATTTGCAT 30153 >seq1740 Length=56962 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || | || |||| | || || | |||||| || ||||| Sbjct 22312 TTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTCCCAGCGAA 22253 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 |||||| | ||||||||| || | || ||||||||| ||||| |||| || Sbjct 22252 AATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATT 22193 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | || || |||| |||||||| || || || | || ||||| Sbjct 22192 GTCAATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTCAC 22133 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 22132 AAAGATTTGCAT 22121 >seq1039 Length=240209 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || || || | || || ||||| | |||| || ||||| ||||||||||| | Sbjct 128618 ATCCACCACGAAGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAG 128677 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | | || ||||| ||||| || || || || | || |||||| || | Sbjct 128678 CAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTG 128737 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| ||| ||| ||| | || | |||| ||| | ||| | Sbjct 128738 GGATTCCCTCCTTGTCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTA 128797 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || ||||| || || || | ||| ||||||||||||||||| Sbjct 128798 CCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 128846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322964019645440