Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq520 273 2e-68 seq1210 255 5e-63 seq6 84.2 2e-11 >seq520 Length=294854 Score = 273 bits (302), Expect = 2e-68 Identities = 585/865 (68%), Gaps = 17/865 (2%) Strand=Plus/Plus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| |||||||| | ||| | ||| ||||| || || ||||| || | Sbjct 261789 CATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTG 261848 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTAT--CGCAT 16048 | |||||| |||||| ||||||||||||| | ||||| || | || | | || Sbjct 261849 AAGTGAAATCAATTCCATCCAATCAAAAGGATTCT--GAACATTATAAATTTTTCCACAA 261906 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 || | ||| |||||||||||| || ||||| || ||||| || |||| ||||||| | Sbjct 261907 CCAAGTTCACCCAATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCG 261966 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | || | ||| | ||||| | ||| | | | || || | |||| Sbjct 261967 TTCATTCCAACCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACC 262026 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTA--ACGGAGGGTT-TAATAAGTGTTTA 16225 || ||| | ||| | | || || || || | | | || | | ||| | || Sbjct 262027 GCATCACGAACAATAGTTTTCAC-ACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATA 262085 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 || || |||||||||||||||||| | |||||||| | || | |||||||||| Sbjct 262086 AAG--TAAACAAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAA 262143 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAG--CGGCAAATGAAC 16343 || || | ||| ||||||| || |||||||||| |||||| || | | | || | || Sbjct 262144 AAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACT--AC 262201 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAt 16403 | || || |||||||||||||| ||||| ||||| | || ||| | | | | Sbjct 262202 CGGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAG 262261 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 | | || |||||||| ||||||||| ||||| | || ||| || | | Sbjct 262262 ATGAA---TCGATCCATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGT 262318 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | ||||||| ||||||| ||| ||||| | ||| |||||||| || || | | Sbjct 262319 CAATTGCATGAAATAAACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGA 262378 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 |||||||||||| |||||||| || || || || ||||| ||||| |||||| | | Sbjct 262379 GACTATACATTTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTG 262438 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 | || || | ||| ||||| || ||| | || | || || ||||| || | Sbjct 262439 CCTCAGAGACTTGAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGT 262498 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 || || ||||| || ||||| | |||| || || | |||| || | || | Sbjct 262499 CGGAGGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGT 262558 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 | ||||| || || ||||| ||| | |||||| |||||| | ||||| || ||||| Sbjct 262559 TGTTCCAGTGAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTT 262618 Query 16764 CAGCCTTTTTATACATTTTCCATAT 16788 | || ||||| ||||||| ||| || Sbjct 262619 CGGCTTTTTTGTACATTTCCCAAAT 262643 >seq1210 Length=122563 Score = 255 bits (282), Expect = 5e-63 Identities = 583/865 (67%), Gaps = 17/865 (2%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| || | ||| | ||| ||||| || || ||||| || | Sbjct 43140 CATAACAGAAGCTTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTG 43081 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATC- 16049 | ||||| ||||| ||||||||||||| | ||||| || | || || || Sbjct 43080 AAGCGAAATCAAATCCATCCAATCAAAAGGATTCT--GAACATTATAAATTTTCCCACAA 43023 Query 16050 CCAATTCCA-ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| || |||| |||||||| || ||||| || |||||||| |||| ||||||| Sbjct 43022 CCAAGCTCACACAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCA 42963 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttt-tCTATATTAAC 16167 |||||||| | ||| ||| | ||||| | || ||||| | | || || | ||| Sbjct 42962 TTCATTCCAACTAAAGCGCAAGGAAGCGCTTC-GCAAACAAATTCTCTCTCGATCTCAAC 42904 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATT---TAACGGAGGGTTTAATAAGTGTTT 16224 || || | || |||| || || || ||| | | | ||| | | Sbjct 42903 AGCATCGCGCACAATCG-TCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAAT 42845 Query 16225 AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA 16284 ||| | | |||||||||||||||||| | ||||||||| | || | ||||||||| Sbjct 42844 AAA--TCAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGA 42787 Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||| || | ||| ||||||| || |||||||||| ||| || || || || || Sbjct 42786 AAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCC 42727 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 ||| || |||||||||||||| ||||| ||||| | | ||| | | | | Sbjct 42726 AGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGA 42667 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | | || |||||||| ||||||||| ||||| | | ||| ||| || | || Sbjct 42666 TGAA---TCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTC 42610 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 ||||||| ||| ||| ||| || || ||| |||||||| || || | | Sbjct 42609 AATTGCATGAAACAAACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAG 42550 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAG 16583 |||||||||||| |||||||||||||| ||||| ||||| || || || |||||| | | Sbjct 42549 ACTATACATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGCG 42491 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 | || || | ||| ||||| || ||| |||| | || || || || || | Sbjct 42490 CCTCTGAGACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGT 42431 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 || ||| ||||| || ||||| | |||| ||||| | |||| || | || | Sbjct 42430 CGGAAGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGT 42371 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 | ||||| | || ||||| ||||||||||| ||||| | ||||| |||||||| Sbjct 42370 TGTTCCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTT 42311 Query 16764 CAGCCTTTTTATACATTTTCCATAT 16788 | || ||||| ||||||| ||| || Sbjct 42310 CGGCTTTTTTGTACATTTCCCAGAT 42286 >seq6 Length=1263909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 || |||||||||||||| || | || || || ||| |||| || ||||| ||||| Sbjct 1160349 ATGCAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTC 1160408 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGC 16332 ||||||||||||| ||||| ||||||| ||| ||||| || Sbjct 1160409 AGACCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGC 1160449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462353450886400