Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1206 91.5 1e-13 seq130 87.8 1e-12 >seq1206 Length=122864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 20424 GCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGC 20483 ||||||| | || || || || ||| || || || |||||||||||||||||||| || Sbjct 80567 GCTATGC-AGTTCTATGTGGCAAATGGGGAGTTATCATGTCAAATGTATCAACGATCTGC 80509 Query 20484 TGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGAT 20543 ||| ||||| || || || || || || |||||| |||||| || | || | ||||| Sbjct 80508 TGACATGGGCCTAGGCGTGCCATTTAACATTGCATCTTATGCACTCTTGACATGCATGAT 80449 Query 20544 TGCACATGTT 20553 ||| |||||| Sbjct 80448 TGCTCATGTT 80439 >seq130 Length=684502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| || || || ||||||||||||||| |||| ||||| ||| Sbjct 344913 CAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAAAGATCTGCTGACATG 344854 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || |||||||| || || || |||||| |||||| || | || | |||||||| ||| Sbjct 344853 GGCCTGGGTGTGCCATTTAACATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCAT 344794 Query 20551 GTT 20553 || Sbjct 344793 ATT 344791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399050580731680