Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1642 107 2e-18 seq1740 95.1 1e-14 seq1039 89.7 4e-13 seq37 84.2 2e-11 >seq1642 Length=65368 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || | | || |||| ||| || || || || Sbjct 34186 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAA 34127 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| |||||| || || || | |||||||||||| |||||| ||| || Sbjct 34126 GATCAACCTCTGTTGATCTGGCGGGATTCCCTCCTTGTCCTGTATTTTTGCCTTCACATT 34067 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || || ||||| | |||||| ||||| || |||| |||||||| Sbjct 34066 ATCTATGGTGTCTGAACTTTCTACCTCTAAGGTAATGGTCTTTCCAGTCAACGTCTTCAC 34007 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 34006 AAAGATTTGCAT 33995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 ||||| || || || ||| |||||||||||||| || | | | | ||| | || || Sbjct 54142 ACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCTAAAGTC-CGACCATCCTC 54084 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||||| || || || | || ||||||||| || || | || || |||||| Sbjct 54083 AAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTG 54024 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || |||||| | | | | || || ||| || || | || || ||||| Sbjct 54023 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTT 53964 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || ||||||||||| Sbjct 53963 GCCAGTGAGGGTCTTAACGAAGATTTGCAT 53934 >seq1740 Length=56962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || | | || |||| ||| || || || || Sbjct 42122 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAA 42181 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| || || || || | |||||||||||| ||||| ||| || Sbjct 42182 GATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGTATTTTGGCCTTGACATT 42241 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| || || ||||| | |||||| ||||| || |||| |||||||| Sbjct 42242 ATCAATTGTGTCTGAACTTTCTACCTCTAAGGTAATGGTCTTTCCAGTCAAGGTCTTCAC 42301 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 42302 AAAGATTTGCAT 42313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 |||||||| |||||||| ||| || ||| || | || |||| ||||||||||| | Sbjct 43035 TCCTTCTGGATGTTGTAATCGGCCAAGGTT--CGGCCATCTTCCAACTGTTTTCCGGCAA 43092 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | || | || ||| ||||| ||||| | |||||||||||| ||| || ||| || Sbjct 43093 AAATGAGCCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGAATCTTAGCCTTTACAT 43152 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | |||| | ||| ||||||| ||||| || ||||| || || ||||||| Sbjct 43153 TGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTCA 43212 Query 45324 CAAAGATTTGCAT 45336 |||| || ||||| Sbjct 43213 CAAAAATCTGCAT 43225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| ||||||||||||||||||||| || | | || Sbjct 22560 AACACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCC 22501 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || || || ||||||| ||| || || || || | || ||||||||| Sbjct 22500 TCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCC 22441 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | |||| || || || |||| ||| || ||| Sbjct 22440 TGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCTACTTCCAAGGTGATGGTC 22381 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||||||||||| ||||| Sbjct 22380 TTTCCGGTCAATGTCTTCACAAAGATCTGCAT 22349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||| || || || | || |||| ||||| ||||| || Sbjct 22083 TCCTTCTGGATGTTGTAATCAGCCAAGGTCCGGCCATCTTCCAACTGTTTCCCGGCAAAA 22024 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||||| || || || | ||||||||||||| ||| || ||| || Sbjct 22023 ATCAACCTTTGTTGATCTGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCTTCACATTG 21964 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||| ||||||| || || ||||| || || |||||||||||| Sbjct 21963 TCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACA 21904 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 21903 AAAATCTGCAT 21893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||| || | | | | || || || |||||||| || || Sbjct 43596 TCCTTCTGGATGTTGTAATCAGCTAATGTCCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 43655 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || |||||||| || || | ||| |||||||| ||| || ||| || Sbjct 43656 ATTAGCCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTGACCTTGACATTA 43715 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | | ||| || ||| ||||| | ||| | ||||| || || |||||||||||| Sbjct 43716 TCTATGGTATCCGAACTCTCTACCTCAAGGGTGACGGTCTTTCCAGTGAGAGTCTTCACA 43775 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 43776 AAGATTTGCAT 43786 >seq1039 Length=240209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || | | || |||| ||| || || || || Sbjct 128655 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAA 128714 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| || || || || | ||||||||||| |||||| ||| || Sbjct 128715 GATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGTATTTTTGCCTTGACATT 128774 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || || ||||||| ||||| ||||| || |||| ||||||||| Sbjct 128775 ATCGATCGTATCTGAACTTTCTACCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCAC 128834 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 128835 AAAGATCTGCAT 128846 >seq37 Length=1182629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||| |||||||| || | | || |||| || Sbjct 291736 GTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTG 291795 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||||| ||| || || | || | ||| ||||| ||| |||||| Sbjct 291796 CTTCCCTGCAAAGATCAACCTCTGCTGATCAGTGGGGATACCTTCCTTATCCTGAATTTT 291855 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | || | ||||||||||| |||||| ||||| || || Sbjct 291856 GGCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTACCAGT 291915 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||| ||||| || ||||| Sbjct 291916 CAAAGTCTTAACAAAAATCTGCAT 291939 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || |||||| ||||||||| |||||||| || || | |||| |||| Sbjct 292922 CAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCGTCTTCCA 292981 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 || ||||||||||| || | || || || || ||||| | || ||||||||| | Sbjct 292982 ACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGA 293041 Query 45249 TTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | || |||| || | | | | |||| | |||||||| | ||| || ||||| Sbjct 293042 TCTTG-GCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTT 293100 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| ||||||||||| Sbjct 293101 CCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394943154015904