Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq520 244 1e-59 seq1210 223 3e-53 seq6 93.3 4e-14 >seq520 Length=294854 Score = 244 bits (270), Expect = 1e-59 Identities = 569/851 (67%), Gaps = 9/851 (1%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| |||||||| | ||| | || ||||| ||||||||||| || | ||||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATC-ACAACCTAGTTCTAATA 14030 |||||| ||||||| ||||| | |||| | | ||| || |||||| ||||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTTCCACAACCAAGTTCACCCA 261919 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||||||||| |||| ||||||||||||||| ||| ||||||| ||||| || | | Sbjct 261920 ATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCA 261979 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | ||||||| | || || || || || | || Sbjct 261980 AAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAA 262039 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 || | | | | || | | | | | | | | | | | ||| |||||| |||| Sbjct 262040 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAA 262099 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 262100 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 262159 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | || || |||||||| | |||||| |||| | ||| ||||| || ||||| || | Sbjct 262160 TTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTT 262219 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 |||| |||||| || | | || ||| |||| || | | ||| ||||||| Sbjct 262220 CAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATC-AGATGAATCG--ATCCATT 262276 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 | ||||||| |||| ||| || |||| || || || ||||| |||| ||||||| Sbjct 262277 TCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAAC 262336 Query 14451 GTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 | | ||| || ||| | ||| || || || ||||| | | |||||||||||||| Sbjct 262337 GATTCTTTTCGATAGAATCATTG--ATATAAGTCTCAATCAAGAGACTATACATTTCAGA 262394 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 || |||||||| || || ||||| ||||| ||||| | || || || ||| || Sbjct 262395 ATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAAC 262454 Query 14569 CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||| |||||| |||| | ||| || |||||||| || || ||||| || Sbjct 262455 TTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAA 262514 Query 14629 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAA 14688 || | | || | || |||| | || | | | | || || ||||| | | | Sbjct 262515 AGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAG 262574 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||| | || ||||| ||||| || ||||||| || ||| | |||||||| ||||| Sbjct 262575 ATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACAT 262634 Query 14749 TACCCATATTT 14759 | |||| |||| Sbjct 262635 TTCCCAAATTT 262645 >seq1210 Length=122563 Score = 223 bits (246), Expect = 3e-53 Identities = 564/851 (66%), Gaps = 9/851 (1%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| || | ||| | || ||||| ||||||||||| || | || || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 ||||| ||||||| ||||| | |||| | | | ||| ||||||| || || | | Sbjct 43068 ATCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCCCACAACCAAGCTCACACA 43010 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 |||||||| |||| ||||||||||| ||| ||| ||||||| |||||| || | || Sbjct 43009 ACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTA 42950 Query 14091 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 ||||| | | | ||||||| | || || ||||| ||| | || Sbjct 42949 AAGCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACAA 42890 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | || | | | || | | | | | | | | | | |||| ||||| |||| Sbjct 42889 TCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCAA 42830 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 42829 AATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 42770 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | || || |||||||| | ||| || |||||| ||| ||| || || ||||| || | Sbjct 42769 TTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTT 42710 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 |||| |||||| || | | | ||| |||| || | | ||| ||||||| Sbjct 42709 CAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATC-AGATGAATCG--ATCCATT 42653 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 | ||||||| |||| ||| ||| ||||| || || |||||||| |||| ||| ||| Sbjct 42652 TCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAAC 42593 Query 14451 GTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 | | |||||| | | | ||| || || || ||||| | | |||||||||||||| Sbjct 42592 GATTCTTCTCAACTGAATCATTG--ATATAAGTCTCAATCAAGAGACTATACATTTCAGA 42535 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 || || || || || || ||||| || || || ||| | || ||||| ||| || Sbjct 42534 ATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAAC 42475 Query 14569 CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||| |||||| | || | ||| || || || || || ||| ||||| || Sbjct 42474 TTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAA 42415 Query 14629 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAA 14688 || | | || | ||||||| | || | | | | || || ||||| | | Sbjct 42414 GGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAG 42355 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||| | || | ||| ||||| || | ||||| ||| ||| | |||||||| ||||| Sbjct 42354 ATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 42295 Query 14749 TACCCATATTT 14759 | |||| |||| Sbjct 42294 TTCCCAGATTT 42284 >seq6 Length=1263909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| |||||||||||| || ||||| ||||| ||||| | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||| ||||||| ||||| | ||| ||||| ||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 1160450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482180251928320