Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1740 84.2 2e-11 seq23 84.2 2e-11 >seq1740 Length=56962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || || || || |||||||||||||| || | || | | ||| |||||||| Sbjct 22552 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAATTG 22493 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 || || ||| |||| | || || ||||| || | |||||||| || |||| Sbjct 22492 CTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGTATTTT 22433 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | |||||| | ||| ||||| || ||| | ||||||| | || ||||| Sbjct 22432 TGCCTTGACATTATCAATTGTGTCTGAACTTTCTACTTCCAAGGTGATGGTCTTTCCGGT 22373 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||| || ||||| || ||||| Sbjct 22372 CAATGTCTTCACAAAGATCTGCAT 22349 >seq23 Length=202804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || || | || || || ||||||||||| |||||||| ||||| Sbjct 5486 CCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGGCA 5427 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||| || || |||| || | ||||||||| || Sbjct 5426 AGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGA 5367 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | || ||||| | | | ||||| || || Sbjct 5366 ATTCCTTCCTTGTCTTGAATTT-TGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTAC 5308 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||| ||| |||||||||| | ||||| || || |||||||| Sbjct 5307 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379217211854880