Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1436 114 1e-20 seq23 96.9 3e-15 >seq1436 Length=88924 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || ||||| |||||| |||| || ||||| || || |||| || ||||| Sbjct 38992 CATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTC 38933 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | || |||| || ||| | |||||||| | || ||| || Sbjct 38932 CGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCA 38873 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| || || || | ||| || || ||| |||||||| | ||| | ||||| | Sbjct 38872 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 38813 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| ||||||||||||||||| | || ||||| ||||| Sbjct 38812 TATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 |||||||||||| ||||| |||||| ||||||||||||| |||||| | || || ||||| Sbjct 7496 CATCATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATC 7437 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 |||| | || | || || | ||||| | || ||||| | || ||| Sbjct 7436 CTCTGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGA 7377 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 |||||| ||| | || | || || |||||||| ||||| | ||| | |||||| Sbjct 7376 CCAGCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTA 7317 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCAT 25035 || ||| || ||||| |||| || ||| Sbjct 7316 CAACATCCAAAAAGAATCCACACTCCAT 7289 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || || || |||||| |||| || ||||| || || |||| || ||||| Sbjct 7265 CATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTC 7206 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | || |||| || ||| | |||||||| | || ||| || Sbjct 7205 TGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCA 7146 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| || || || | ||| || || ||| |||||||| | ||| | ||||| | Sbjct 7145 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 7086 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| | ||||||||||| || | | ||||| || || Sbjct 7085 TATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGG 7038 >seq23 Length=202804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 || |||||| || || || |||||| ||||||||||||| |||||| | || || ||||| Sbjct 5256 CACCATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATC 5315 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 ||||| | || | || || | |||||| | || ||||| | || || Sbjct 5316 CTCCGACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGA 5375 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 || |||||| | || | || || |||||||| |||||| | ||| | |||||| Sbjct 5376 TCAACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTA 5435 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||| || ||||| ||||||| ||| | || | || | |||||||| Sbjct 5436 CAACATCCAAAAAGAATCCACGCTCCATCTCGTTCTCCGTCTCCGCGGAGG 5486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418164190254080