Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37 116 3e-21 seq1436 114 1e-20 seq23 109 5e-19 seq1642 107 2e-18 seq78 107 2e-18 seq1740 105 6e-18 seq933 98.7 9e-16 seq322 93.3 4e-14 seq426 86.0 6e-12 seq276 86.0 6e-12 seq319 82.4 7e-11 >seq37 Length=1182629 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || || || |||||| | || || ||| || Sbjct 293129 ATGCAAATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 293070 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||||||| | || || || ||| Sbjct 293069 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAG 293010 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || || |||||||||||| | |||| | ||||| ||| Sbjct 293009 CAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAAC 292950 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || |||||||| || || | ||| | || |||| Sbjct 292949 ATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGGTA 292901 >seq1436 Length=88924 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || |||||||| || ||| | || || ||| | || Sbjct 7493 CATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTC 7434 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| | ||| ||||||||||| | || || ||||| Sbjct 7433 TGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCA 7374 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || ||||| | |||||| ||| | |||||| || Sbjct 7373 GCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAA 7314 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| || || ||||| || || Sbjct 7313 CATCCAAAAAGAATCCACACTCCATCTCGTTCT 7281 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || |||||||| || ||| | || || ||| | || Sbjct 39219 CATGCAGATCTTCGTGAAAACCCT-ACCGGCAAAACCATAACCCTAGAGGTAGAATCCTC 39161 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | |||||| | ||| ||||||||||| | || || ||||| Sbjct 39160 CGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGACCA 39101 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || ||||| || ||||| | |||||| ||| | |||||| || Sbjct 39100 ACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAA 39041 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| || || || || || || Sbjct 39040 CATCCAAAAAGAATCCACACTCCACCTCGTCCT 39008 >seq23 Length=202804 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || |||||||| || ||| | || || ||| | || Sbjct 5259 CATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTC 5318 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | |||||| | ||| ||||||||||| | || || || || Sbjct 5319 CGACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 5378 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||| || ||||| | ||||| ||| | |||||| || Sbjct 5379 ACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAA 5438 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||||||||| || || ||||| || || Sbjct 5439 CATCCAAAAAGAATCCACGCTCCATCTCGTTCT 5471 >seq1642 Length=65368 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || || ||| | || || || || Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| |||||| ||||| | || || |||||| Sbjct 33827 GACACTATTGACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAG 33886 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || ||| ||||||| |||| || ||||||||| Sbjct 33887 CAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAAC 33946 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| || || ||||| || || ||| | |||||||| |||| Sbjct 33947 ATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTA 33995 >seq78 Length=963227 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || ||||| || ||||| ||| |||| ||||| Sbjct 604863 CAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTTGAGT 604804 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | |||||| | || ||||||||||| | || || | Sbjct 604803 CTTCTGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCTG 604744 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| || || ||||| ||||| ||| | ||| | Sbjct 604743 ACCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTAGAAGATGGCCGCACTCTCGCCGACT 604684 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || ||||| |||||||| || || || Sbjct 604683 ACAACATCCAGAAGGAATCAACTCTTCACCTTGTTCT 604647 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||| ||| |||| |||||| | Sbjct 597900 AAGATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTTGAATCT 597841 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | ||||| | ||| ||||||||||| | || || || Sbjct 597840 TCTGATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGAT 597781 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || || || ||||| || |||||| | |||||| ||| | ||| || Sbjct 597780 CAACAACGACTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTAC 597721 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| |||||||| || || || Sbjct 597720 AATATCCAGAAGGAATCAACTCTTCACCTTGTTCT 597686 >seq1740 Length=56962 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || || ||| | || || || || Sbjct 42541 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 42482 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || ||| || |||||| ||||| | || || ||||| Sbjct 42481 GACACTATTGACAATGTGAAGACCAAGA-TACAGGACAAAGAAGGTATCCCCCCAGACCA 42423 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || ||||| || ||| ||||||| |||| || |||||||| Sbjct 42422 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAA 42363 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| ||||| | || ||||| || || ||| | |||||||| |||| Sbjct 42362 CATTCAGAAAGAGTTCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTA 42313 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || ||||||||||| || || | || ||||| || Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||| || | || || |||||| Sbjct 43165 GACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 43106 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||||||||||| || || |||||| ||| Sbjct 43105 CAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAAC 43046 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || |||||||| || ||| | |||||||||||| Sbjct 43045 ATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGCGGTA 42997 >seq933 Length=173040 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| ||||||| || || ||||| | || ||||| || Sbjct 29697 ATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTTGAGAGTTCA 29756 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| | || ||| |||||||| | || ||||| ||| Sbjct 29757 GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCCGATCAG 29816 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || || | ||||| || ||| | ||||||||| Sbjct 29817 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTATAAC 29876 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||| ||||| ||||| ||| |||| Sbjct 29877 ATCCAAAAGGAATCCACTCTCCATTTGGT 29905 >seq322 Length=397916 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| ||||||| ||||| || || | || ||||| || Sbjct 312301 ATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 312242 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || ||| | || ||| || || || | || || || ||| Sbjct 312241 GATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCAG 312182 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || || || |||||| | || || | | || ||| ||||| || Sbjct 312181 CAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGA-TGGAAGAACCCTAGCTGATTACAA 312123 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || |||||| ||||||||||| |||| || || Sbjct 312122 CATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGG 312075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || || || | || ||||| | | Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| | ||| ||| || || || | || | |||||| Sbjct 333349 GATACTATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCAG 333290 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| || || ||||| ||||||||||| | ||| || |||||||| Sbjct 333289 CAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAAT 333230 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| ||||| || ||||| Sbjct 333229 ATCCAGAAGGAATCTACTCTCCACCTGGT 333201 >seq426 Length=522792 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||| ||| |||| |||||| | Sbjct 162821 AAGATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACGATAACCCTCGAGGTTGAATCT 162762 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | ||||| | ||| ||||||||||| | || || || Sbjct 162761 TCTGATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGAT 162702 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || || || ||||| || |||||| | |||||| ||| | ||| || Sbjct 162701 CAACAACGACTCATCTTCGCAGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTAC 162642 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| |||||||| || || || Sbjct 162641 AATATCCAGAAGGAATCAACTCTTCACCTTGTTCT 162607 >seq276 Length=436033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||| ||| |||| |||||| | Sbjct 192252 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATAACCCTCGAGGTTGAATCT 192311 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | ||||| | ||| ||||||||||| | || || || Sbjct 192312 TCTGATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGAT 192371 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || || || || ||||| || |||||| | |||||| ||| | ||| || Sbjct 192372 CAACAACGACTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTAC 192431 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| |||||||| || || || Sbjct 192432 AATATCCAGAAGGAATCAACTCTTCACCTTGTTCT 192466 >seq319 Length=603634 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || |||||||||||| | | || || ||||| || ||| |||| Sbjct 440822 GGACAAGGAAGGTATCCCTCCCGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGA 440763 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||| | ||||||||||| ||||| ||||| || ||||| |||| || Sbjct 440762 AGATGGCCGCACTCTTGCTGATTATAACATACAAAAGGAATCAACACTTCACTTGGTCCT 440703 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 440702 GAGGCTCAGGGGTGG 440688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445613591278080