Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq520 284 2e-71 seq1210 250 3e-61 >seq520 Length=294854 Score = 284 bits (314), Expect = 2e-71 Identities = 586/869 (67%), Gaps = 2/869 (0%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || ||||| || || || || || ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||| ||||||| ||||| |||||| ||||||||| | | || | |||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 |||||||| || || || || |||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | ||||| || || || ||||||| ||||| ||||||| | ||| Sbjct 261981 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAAT 262040 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | | | || |||||||| || | | ||| | | | | ||||| || || Sbjct 262041 AGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAAA 262100 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||||| Sbjct 262101 ATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 262160 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || ||||| |||||||||||||| || ||| ||| ||||| || || || ||||| Sbjct 262161 TAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTTC 262220 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTTTT 33768 || |||||| |||| | ||| || || | | | || || ||||| || Sbjct 262221 AACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTTCA 262279 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 ||||||||| || ||||| | |||||| ||||| || || |||| ||| | | | Sbjct 262280 TAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACGAT 262339 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 | ||||| || ||| || | |||||| || ||||| |||||||||||||| ||||||| Sbjct 262340 TCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATGAA 262399 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 |||||||||| || ||||| || ||||| || | ||||| | | || |||||| Sbjct 262400 TGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTCTT 262459 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | |||| | | || | ||| || ||||| || || ||| ||||| || || | Sbjct 262460 TCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAGCAA 262519 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 34068 || ||| || || | |||| | ||||| || ||||| | | | ||||| Sbjct 262520 GAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGATCTT 262579 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 || | ||| |||||||| ||||||| ||||| || || || ||||| ||||| | || Sbjct 262580 GTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTTCCC 262639 Query 34129 AGATGTCATGATATTGGATTGGGAAAATA 34157 | || | | | ||||| || ||||| ||| Sbjct 262640 AAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 250 bits (276), Expect = 3e-61 Identities = 583/873 (67%), Gaps = 10/873 (1%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| ||||||| ||||| |||||| |||||||| | | || | ||| | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA- 33468 ||||||||| || || || || ||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 33469 -GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 | || ||||| || | || ||||||| || || || |||| | | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 || | || ||||| || || | | ||| | | | |||||||| || Sbjct 42890 ATCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCA 42831 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 ||||| || || || || ||||| | ||| | ||||| ||||| || | || ||| Sbjct 42830 AAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 42771 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 |||| ||||| ||||||||||| || || | | ||| ||| || || || || ||| Sbjct 42770 ATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCT 42711 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTT 33766 || || |||||| |||| | || || || | | | || || ||||| || Sbjct 42710 TCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTT 42652 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||||| || |||||| | | |||||| |||||||| || |||| ||| | | Sbjct 42651 CATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAACG 42592 Query 33827 GtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 || || ||| ||| ||| || | |||||| || ||||| |||||||||||||| ||| Sbjct 42591 ATTCTTCTCA--ACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAA 42534 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 ||||| || || || || ||||| |||||||||||| | ||||| | | || ||| Sbjct 42533 TGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAACT 42474 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | |||| | |||| | ||| || || || || || || ||||| || Sbjct 42473 TCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAAG 42414 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 || | || ||| ||||| | |||| | ||||| || ||||| | || | | Sbjct 42413 GCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAGA 42354 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 |||| |||| ||| |||||||| | ||||| || || || || || ||||| ||||| Sbjct 42353 TCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATT 42294 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 | |||||| | | | ||||| |||||||| ||| Sbjct 42293 TCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629601698526720