Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1210 210 2e-49 seq520 192 5e-44 >seq1210 Length=122563 Score = 210 bits (232), Expect = 2e-49 Identities = 576/873 (66%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| || | ||| || || ||||| ||||| || || | || || || | Sbjct 43127 TTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAAA 43068 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||||||| | ||||| | | ||| ||||||| | ||| || Sbjct 43067 TCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAAC 43008 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || || || ||||||||| ||| ||| || |||||| || | | | Sbjct 43007 AATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAAA 42948 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | |||| || | | ||| || | || || | ||| ||||| | ||| Sbjct 42947 GCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACAATC 42888 Query 11579 GACGTTATAA---CTTC-CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | | | | |||| || || | | | | | || | |||| | ||||| || Sbjct 42887 GTCTTCACACGCTCTTCGCTAAGTTTCTT--TCTCAAAAGCGAATAAA--TCAAACAAGC 42832 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||||||| | |||||||| | || || || || ||||| ||||| || || Sbjct 42831 AAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 42772 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| || || |||||||| | ||| || || ||| || ||||| || ||||| || Sbjct 42771 CATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACC 42712 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTT-GTTGCTAGATATCCATT 11813 || ||| ||||| || || | ||||| || || | | || | ||||||| Sbjct 42711 TTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCATT 42653 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 | | |||||||||||||||||| | | || || ||||| || || | ||| ||| Sbjct 42652 TCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAAC 42593 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | || || | ||| | | ||| || || || || | |||||||||||| |||| Sbjct 42592 GATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAAT 42533 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 ||||||| || || || || || ||||| |||||| || |||||||| || || | Sbjct 42532 GAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAACTT 42473 Query 11994 C-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 | ||| |||||| | || | |||||| || || || || || ||||| || Sbjct 42472 CTTTCAT-GAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAAG 42414 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || || | ||| ||||||| |||| | | |||| || | ||| | || | | Sbjct 42413 GCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAGA 42354 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 |||| |||||||| |||||||| ||||||| ||| || | | || ||| |||||| Sbjct 42353 TCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATT 42294 Query 12173 TTCCAGATATCATGATACTTAATAGGGAAAATA 12205 | |||||| | | | || | ||| ||||| ||| Sbjct 42293 TCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq520 Length=294854 Score = 192 bits (212), Expect = 5e-44 Identities = 577/879 (66%), Gaps = 24/879 (3%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || |||||||| | ||| || || ||||| ||||| || || | ||||| || | Sbjct 261802 TTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAAT 261861 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||||||| | ||||| | | |||| ||||||| | || ||| Sbjct 261862 TCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAAT 261921 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || || || ||||| ||| ||| ||| || ||||| || | | | Sbjct 261922 AATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAAA 261981 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA------ATG 11572 | |||| || | | ||| || | || || | |||||||||| || Sbjct 261982 GCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAATA 262041 Query 11573 ATTATCG-ACGTTATAACTTC-CTTAGATGGTGGATGTAATAAATGTTTAAACATTAAAC 11630 || || ||| | |||| || || | | | | | || | |||| ||||| Sbjct 262042 GTTTTCACACGCT----CTTCACTAAGTTTCTT--TCTCAAAAGCGAATAAAG--TAAAC 262093 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | |||||||||||||| | ||||||||| | || || || || ||||| ||||| | Sbjct 262094 AAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAAC 262153 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAAAGAA 11748 | ||||| || || |||||||| | |||||| || | ||| || | ||| || || || Sbjct 262154 CAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACT--ACCGGAGAAAAA 262211 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATA 11807 ||| || || ||| ||||| || || | |||||| || || | | || | | Sbjct 262212 TATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATG-AATCGA 262270 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 ||||||| | ||||||||||||||||| | || || || || || || | || Sbjct 262271 TCCATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAA 262330 Query 11868 ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 ||||| | | ||||| ||| ||| | | ||| || || || || | ||||||||||| Sbjct 262331 ATAAACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTT 262390 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987 | |||||||| ||||| || || || || || || || || |||||||| || | Sbjct 262391 CAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTT 262450 Query 11988 GTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 | || || ||| |||||| | || | |||||| || ||||| || | ||| Sbjct 262451 GAACTTCTTTCAT-GAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCA 262509 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCA 12106 || || || || | ||| || |||| |||| | | |||| || | ||| | | Sbjct 262510 AAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGA 262569 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166 | ||||| ||| | ||| |||||||| | ||||| || || | | || ||| Sbjct 262570 GGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTG 262629 Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||| ||| || | | | || | ||| ||||| ||| Sbjct 262630 TACATTTCCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468364189698560