Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq520 269 3e-67 seq1210 241 2e-58 >seq520 Length=294854 Score = 269 bits (298), Expect = 3e-67 Identities = 585/871 (67%), Gaps = 6/871 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || ||||| || || || || || ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||| |||| || ||||| |||||||||||||||| | | || | |||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 36043 |||||||| || ||||| || |||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 36044 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 36103 || || ||||| || || || ||||||| ||||| ||||| || | | Sbjct 261981 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACA 262038 Query 36104 ATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 36163 |||| | | || |||||||| || | ||| | | | | ||||| || Sbjct 262039 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCA 262098 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||| Sbjct 262099 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 262158 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGATCCAGAAAAGAAAATTCC 36282 |||| ||||| |||||||||||||| || || | ||| | || || || || || || Sbjct 262159 ATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTA-CCGGAGAAAAATATACC 262217 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 ||| || ||||| |||| | ||| || || | || || ||||| || Sbjct 262218 TTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAATCGATCCATTT 262277 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||||| || ||||| | |||||| || || || || |||| ||| | | Sbjct 262278 CATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACG 262337 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 || ||||| || ||| || | ||| || |||||||| |||||||||||||| ||||| Sbjct 262338 ATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATG 262397 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 |||||||||||| || || || || ||||| || | ||||| | | || ||||| Sbjct 262398 AATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTC 262457 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | | |||| | | || | ||| || ||||| ||||| ||| ||||| || || Sbjct 262458 TTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAGC 262517 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATC 36642 | || ||| || || | |||| ||||| || ||||| | | | ||| Sbjct 262518 AAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGATC 262577 Query 36643 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 36702 || || | ||| |||||||| ||||||| ||||| || || || ||||| ||||| | Sbjct 262578 TTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTTC 262637 Query 36703 CCAGATGTCATGATATTGAATTGGAAAAATA 36733 ||| || | | | |||||||| || || ||| Sbjct 262638 CCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 241 bits (266), Expect = 2e-58 Identities = 581/873 (67%), Gaps = 10/873 (1%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| || ||||| ||||||||||||||| | | || | ||| | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 36043 ||||||||| || ||||| || ||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 36044 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 36103 || || ||||| || | || ||||||| || || || || || | | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 36104 ATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 36163 || | | || ||||| || || | ||| | | | |||||||| || Sbjct 42890 ATCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCA 42831 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| || || || || ||||| | ||| | ||||| ||||| || | || ||| Sbjct 42830 AAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 42771 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCC 36282 |||| ||||| ||||||||||| || || | | || || |||||| || || || || Sbjct 42770 ATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAGAAACTTCCAGAGAAAAATATACC 42712 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 ||| || ||||| |||| | || || || | || || ||||| || Sbjct 42711 TTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATCGATCCATTT 42652 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||||| || |||||| | | |||||| || || || || |||| ||| | | Sbjct 42651 CATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAACG 42592 Query 36403 GtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 || || ||| ||| ||| || | ||| || |||||||| |||||||||||||| ||| Sbjct 42591 ATTCTTCTCA--ACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAA 42534 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 ||||| || || || || || || |||||||||||| | ||||| | | || ||| Sbjct 42533 TGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAACT 42474 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| | |||| | |||| | ||| || || || ||||| || ||||| || Sbjct 42473 TCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAAG 42414 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 || | || ||| ||||| | |||| ||||| || ||||| | || | | Sbjct 42413 GCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAGA 42354 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 |||| |||| ||| |||||||| | ||||| || || || || || ||||| ||||| Sbjct 42353 TCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATT 42294 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | |||||| | | | ||||||||||| || ||| Sbjct 42293 TCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657947178364160