Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq520 260 1e-64 seq1210 215 5e-51 seq6 93.3 4e-14 >seq520 Length=294854 Score = 260 bits (288), Expect = 1e-64 Identities = 575/853 (67%), Gaps = 13/853 (2%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||||| | ||| | || ||||| ||||||||||| || | ||||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATC-ACAACCTAGTTCTAATA 13698 |||||| ||||||| ||||| | |||| | | ||| || |||||| ||||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTTCCACAACCAAGTTCACCCA 261919 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 |||||||||||||| |||||||||||||||| ||| ||||||| ||||| || | | Sbjct 261920 ATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCA 261979 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | ||||||| | || || || || || | || Sbjct 261980 AAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAA 262039 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 || || | | | ||| | | | | | | | | | | | ||| |||||| |||| Sbjct 262040 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAA 262099 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 262100 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 262159 Query 13939 TCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAAAGAATATTCC 13996 | || || |||||||| | |||||| |||| ||| || | ||||| || ||||| || Sbjct 262160 TTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACT--ACCGGAGAAAAATATACC 262217 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 ||||| |||||| || | | || ||| |||| || | | ||| ||||| Sbjct 262218 TTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATC-AGATGAATCG--ATCCA 262274 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||| ||||||| |||| ||| || |||| || || || ||||| |||| |||||| Sbjct 262275 TTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAA 262334 Query 14117 ATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | | ||| || ||| | ||| || || || ||||| | | |||||||||||| Sbjct 262335 ACGATTCTTTTCGATAGAATCATTG--ATATAAGTCTCAATCAAGAGACTATACATTTCA 262392 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 || || |||||||| || || ||||| ||||| |||||| | || || || ||| Sbjct 262393 GAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGA 262452 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| |||||| |||| | ||| || |||||||| || || ||||| Sbjct 262453 ACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAG 262512 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT 14354 || || | | || | || |||| | || | | | | || || ||||| | | Sbjct 262513 AAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGA 262572 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 | ||| | || ||||| ||||| || ||||||| || ||| | |||||||| ||| Sbjct 262573 AGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTAC 262632 Query 14415 ATTACCCATATTT 14427 ||| |||| |||| Sbjct 262633 ATTTCCCAAATTT 262645 >seq1210 Length=122563 Score = 215 bits (238), Expect = 5e-51 Identities = 567/854 (66%), Gaps = 15/854 (2%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| || | ||| | || ||||| ||||||||||| || | || || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| ||||||| ||||| | |||| | | | ||| ||||||| || || | | Sbjct 43068 ATCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCCCACAACCAAGCTCACACA 43010 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||||||||||| |||||||||||| ||| ||| ||||||| |||||| || | || Sbjct 43009 ACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTA 42950 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||| | | | ||||||| | || || ||||| || | || Sbjct 42949 AAGCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACAA 42890 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 | | | | | ||| | | | | | | | | | | |||| ||||| |||| Sbjct 42889 TCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCAA 42830 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 42829 AATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 42770 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | || || |||||||| | ||| || |||||| || || || || ||||| || | Sbjct 42769 TTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTT 42710 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 |||| |||||| || | | | ||| |||| || | | ||| ||||||| Sbjct 42709 CAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATC-AGATGAATCG--ATCCATT 42653 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 | ||||||| |||| ||| ||| ||||| || || |||||||| |||| ||| ||| Sbjct 42652 TCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAAC 42593 Query 14119 ATTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 | |||||| | | | ||| || || || ||||| | | |||||||||||||| Sbjct 42592 GATTCTTCTCAACTGAATCATTG--ATATAAGTCTCAATCAAGAGACTATACATTTCAGA 42535 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCGACCATTGTA 14235 || || || || || || ||||| || || || |||||| | || || || ||| | Sbjct 42534 ATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCTGAGACTTGAA 42476 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| |||||| | || | ||| || || || || || ||| ||||| | Sbjct 42475 CTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGA 42416 Query 14296 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT- 14354 | || | | || | ||||||| | || | | | | || || ||||| | ||| Sbjct 42415 AGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGT--GATG 42358 Query 14355 -AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 | ||| | || | ||| ||||| || | ||||| ||| ||| | |||||||| || Sbjct 42357 AAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTA 42298 Query 14414 CATTACCCATATTT 14427 |||| |||| |||| Sbjct 42297 CATTTCCCAGATTT 42284 >seq6 Length=1263909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| |||||||||||| || ||||| ||||| ||||| | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 |||||||| ||||||| ||||| | ||| ||||| ||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 1160450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479563549241600