Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq520 242 4e-59 seq1210 228 8e-55 seq6 93.3 4e-14 >seq520 Length=294854 Score = 242 bits (268), Expect = 4e-59 Identities = 569/853 (67%), Gaps = 13/853 (2%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | ||| | || ||||||||||||||||| || | ||||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATC-ACAACCTAGTTCTAATA 13486 |||||| |||| || ||||| | |||| | | ||| || |||||| ||||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTTCCACAACCAAGTTCACCCA 261919 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 ||||||||||||||| |||||||||||||||| ||| ||||||| ||||| || | | Sbjct 261920 ATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCA 261979 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||||| | | | ||||||| | || || || || || | || Sbjct 261980 AAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAA 262039 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 || | || | | || | | | | | | | | | | | ||| |||||| |||| Sbjct 262040 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAA 262099 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 ||||||||||||| || || || | |||||| ||||||||||| ||||| || |||| Sbjct 262100 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 262159 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | || || |||||||| | |||||| |||| | ||| ||||| || ||||| || | Sbjct 262160 TTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTT 262219 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCA 13844 |||| |||||| || | | || ||| |||| || | | | || ||||| Sbjct 262220 CAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGA-----ATCAGATGAATCGATCCA 262274 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||| ||||||| |||| ||| || |||| || || || || ||||||| ||||| Sbjct 262275 TTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAA 262334 Query 13905 ATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | | | ||| || ||| | ||| || || || ||||| | | |||||||||||| Sbjct 262335 ACGATTCTTTTCGATAGAATCATTG--ATATAAGTCTCAATCAAGAGACTATACATTTCA 262392 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 || || |||||||| || || ||||| ||||| ||||| | || || || ||| Sbjct 262393 GAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGA 262452 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 || || |||||| | || | || || || ||||| || || ||||| Sbjct 262453 ACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAG 262512 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT 14142 || || | | || | || |||| | || | | | | || || ||||| | | Sbjct 262513 AAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGA 262572 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202 | ||| | || ||||| ||||| || ||||||| || ||| | |||||||| ||| Sbjct 262573 AGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTAC 262632 Query 14203 ATTACCCATATTT 14215 ||| |||| |||| Sbjct 262633 ATTTCCCAAATTT 262645 >seq1210 Length=122563 Score = 228 bits (252), Expect = 8e-55 Identities = 568/854 (67%), Gaps = 15/854 (2%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||| | || ||||||||||||||||| || | || || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | |||| | | | ||| ||||||| || || | | Sbjct 43068 ATCCATCCAATCAAAAGGATTC-TGAACATTATAAATTTTCCCACAACCAAGCTCACACA 43010 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | ||||||||||||| |||||||||||| ||| ||| ||||||| |||||| || | || Sbjct 43009 ACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTA 42950 Query 13547 GTTTTACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATA 13605 ||||| || | || ||||||| | || || ||||| ||| | | Sbjct 42949 AAGCGCAAGGAAGCGC-TTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 13606 ATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 || |||| | | || | | | | | | | | | | |||| ||||| ||| Sbjct 42890 ATCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCA 42831 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 |||||||||||||| || || || | |||||| ||||||||||| ||||| || ||| Sbjct 42830 AAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 42771 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || || || |||||||| | ||| || |||||| ||| ||| || || ||||| || Sbjct 42770 ATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCT 42711 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCC 13843 ||||| |||||| || | | | ||| |||| || | | | || |||| Sbjct 42710 TCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGA-----ATCAGATGAATCGATCC 42656 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 |||| ||||||| |||| ||| ||| ||||| || || ||||| ||||||| || | Sbjct 42655 ATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACA 42596 Query 13904 AATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 || | | |||||| | | | ||| || || || ||||| | | ||||||||||| Sbjct 42595 AACGATTCTTCTCAACTGAATCATTG--ATATAAGTCTCAATCAAGAGACTATACATTTC 42538 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 ||| || || || || || || ||||| || || || ||| | || ||||| ||| Sbjct 42537 AGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTG 42478 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 || || |||||| |||| | || || || || || || ||| ||||| Sbjct 42477 AACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAA 42418 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGC 14141 || || | | || | ||||||| | || | | | | || || ||||| | Sbjct 42417 GAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATG 42358 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | ||| | || | ||| ||||| || | ||||| ||| ||| | |||||||| || Sbjct 42357 AAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTA 42298 Query 14202 CATTACCCATATTT 14215 |||| |||| |||| Sbjct 42297 CATTTCCCAGATTT 42284 >seq6 Length=1263909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| ||||| |||||||||||| || ||||| ||||| ||||| | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||| ||||||| ||||| | ||| ||||| ||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 1160450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478424739759360