Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1436 102 6e-17 seq1740 100 2e-16 seq933 91.5 1e-13 seq322 86.0 5e-12 >seq1436 Length=88924 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||| | | ||| ||||| | ||| ||| || || | ||| ||||| | Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCA 38824 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| || || ||||| ||||||||||| ||||| | || Sbjct 38825 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGG 38884 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| | | || || || | | ||||||| | || || Sbjct 38885 ATTCCTTCTTTATC-CTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 38943 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 38944 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| || | |||||||| | || ||| || || | ||| ||||| | Sbjct 7038 CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGCA 7097 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| || || ||||| ||||||||||| ||||| | || Sbjct 7098 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 7157 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| | | || || || | | |||||| | || || Sbjct 7158 ATTCCTTCTTTATC-CTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAAC 7216 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 7217 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 7264 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | || | ||||| ||| || ||||| | |||||||||| Sbjct 7265 GCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 7324 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | |||||| ||||| || || | ||||| || || | || Sbjct 7325 AAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 7384 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||||||| || | | ||||| | || || Sbjct 7385 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATTCTAC 7444 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 7445 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 7492 >seq1740 Length=56962 Score = 100 bits (110), Expect = 2e-16 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||| | ||| || || | || ||||| ||||| ||||||||| Sbjct 22083 TCCTTCTGGATGTTGTAATCAGCCAAGGTCCGGCCATCTTCCAACTGTTTCCCGGCAAAA 22024 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||| | |||||||| | || | ||| || || || ||| ||| | || || | Sbjct 22023 ATCAACCTTTGTTGATCTGGGGGAATACCCTCCTTGTC-CTGAATCTTAGCCTTCACATT 21965 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| ||||| ||| ||| || || | ||||| || |||||||| ||||| |||| Sbjct 21964 GTCAATAGTGTC-TGAGCTCTCAACCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCA 21906 Query 43097 CAAAAATTTGCAT 43109 ||||||| ||||| Sbjct 21905 CAAAAATCTGCAT 21893 >seq933 Length=173040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || || || ||||| || | ||| ||||| || | ||| ||||| | Sbjct 30152 GCCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGC 30093 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || ||||| || || ||||||||||| | | ||| || || | || Sbjct 30092 CAGAGTACGACCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGAGG 30033 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||| ||||| || ||| || | || || || ||| ||| ||| | ||| | Sbjct 30032 AATACCCTCTTTATC-CTGAATTTTTGCCTTCACATTGTCAATTGTATCGGAACTCTCAA 29974 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| || ||||| || || || || |||||||||||||| Sbjct 29973 CCTCCAATGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 29925 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||||| |||| |||||||| | || ||||| | Sbjct 29923 CCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 29864 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||| || || ||||| || | | ||| ||||||| || Sbjct 29863 AGTGTCCTACCATCTTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGG 29804 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| || |||| || | ||| || || | ||| || Sbjct 29803 ATACCTTCCTTATC-CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 29745 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || | ||| |||||||||||||||||| Sbjct 29744 CTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTCACAAAAATTTGCATT 29696 >seq322 Length=397916 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || || || |||| |||| ||| ||||| || | ||| ||||| | Sbjct 333182 GCCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGC 333241 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||| | || ||||| || |||||||||||||| | | ||| || || || Sbjct 333242 CAGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGG 333301 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||| ||||| || ||| || |||| || || ||| || ||| | ||| | Sbjct 333302 AATACCCTCTTTATC-CTGAATTTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCAA 333360 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| || ||||| || || || || |||||||||||||| Sbjct 333361 CCTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||||| |||| |||||||| | || ||||| | Sbjct 311847 CCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 311906 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | ||| || || ||||| || | | ||| ||||| | || Sbjct 311907 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGAGGG 311966 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| || |||| || | ||| || || | ||| || Sbjct 311967 ATACCCTCCTTATC-CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 312025 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || | ||| || ||||||||||||||| Sbjct 312026 CTCTAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCATT 312074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381242134838592