Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq520 273 3e-68 seq1210 248 1e-60 >seq520 Length=294854 Score = 273 bits (302), Expect = 3e-68 Identities = 586/871 (67%), Gaps = 6/871 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || ||||| || || || || || ||||| ||||| || || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||| ||||||| ||||| |||||||||||||||| | | || | |||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 41950 |||||||| || | || || |||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 || || ||||| || || || ||||||| ||||| ||||| || | | Sbjct 261981 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACA 262038 Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 |||| | | || |||||||| || | ||| | | | | ||||| || Sbjct 262039 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCA 262098 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| || || ||||| || || | ||| | ||||| ||||| || | || ||| Sbjct 262099 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 262158 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGA-CGCAAATGATCCAGAAAAGAAGATTCC 42189 |||| ||||| |||||||||||||| || || | ||| | || || || || || || Sbjct 262159 ATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTA-CCGGAGAAAAATATACC 262217 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 42249 ||| || ||||| |||| | ||| || || | || || ||||| || Sbjct 262218 TTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAATCGATCCATTT 262277 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||||| || ||||| | |||||| ||||| || || |||| ||| | | Sbjct 262278 CATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACG 262337 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 || ||||| || ||| || | ||| || || ||||| |||||||||||||| ||||| Sbjct 262338 ATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATG 262397 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 |||||||||||| || ||||| || ||||| || | ||||| | || || ||||| Sbjct 262398 AATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTC 262457 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | |||| | | || | ||| || ||||| ||||| ||| ||||| || || Sbjct 262458 TTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAGC 262517 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 | || ||| || || | |||| | |||| || ||||| | | | ||| Sbjct 262518 AAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGATC 262577 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 || || | ||| ||||||||| | ||||| ||||| ||||| || ||||| ||||| | Sbjct 262578 TTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTTC 262637 Query 42610 CCAGATATCATGATATTGAATTGGGAAAATA 42640 ||| || | | | |||||||| ||||| ||| Sbjct 262638 CCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 248 bits (274), Expect = 1e-60 Identities = 585/874 (67%), Gaps = 12/874 (1%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || || || || || || || ||||| ||||| || || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||| ||||| ||||||||||||||| | | || | ||| | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 41950 ||||||||| || | || || ||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 || || ||||| || | || ||||||| || || || || || | | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 42011 ATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 || | |||| || ||||| || || | ||| | | | |||||||| || Sbjct 42890 ATCG-TCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGC 42832 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| || || || || || || | ||| | ||||| ||||| || | || || Sbjct 42831 AAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 42772 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTC 42188 ||||| ||||| ||||||||||| || || | | || || |||||| || || || | Sbjct 42771 CATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAGAAACTTCCAGAGAAAAATATAC 42713 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 42248 |||| || ||||| |||| | || || || | || || ||||| | Sbjct 42712 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATCGATCCATT 42653 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 | ||||||||| || |||||| | | |||||| |||||||| || |||| ||| | | Sbjct 42652 TCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAAC 42593 Query 42309 AGtttttttCATTACT--ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 || || ||| ||| ||| || | ||| || || ||||| |||||||||||||| || Sbjct 42592 GATTCTTCTCA--ACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGA 42535 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 |||||| || || || || ||||| |||||||||||| | ||||| | || || || Sbjct 42534 ATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAAC 42475 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 |||| | |||| | | || | ||| || || || ||||| || ||||| || Sbjct 42474 TTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAA 42415 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 || | || ||| ||||| | |||| | |||| || ||||| | || | Sbjct 42414 GGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAG 42355 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||||| |||| ||| |||||||| | ||||| || || ||||| || ||||| ||||| Sbjct 42354 ATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 42295 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | |||||| | | | |||||||||||||| ||| Sbjct 42294 TTCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670909133482240