Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq23 123 3e-23 seq1436 109 6e-19 seq933 98.7 1e-15 seq37 95.1 1e-14 seq1740 93.3 4e-14 seq322 91.5 1e-13 >seq23 Length=202804 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | ||| | ||| | || ||||||||||| |||||||||||| Sbjct 5487 GCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGGC 5428 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||||||||||| || || |||| |||||||| ||||| || || Sbjct 5427 AAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGG 5368 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| |||||| ||| | | || | ||||| | || |||||| Sbjct 5367 AATTCCTTCCTTGTCTTGAATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTAC 5308 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || |||||||| | ||||| ||||| |||||||| Sbjct 5307 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| |||||||||||| || || || ||||| | || || || || Sbjct 5697 AACAAGATGAAGTGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCCTC 5638 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || |||||||||||| |||||| ||||||||||| || || || ||||| || || Sbjct 5637 AAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGTGGAATCCCTTCCTTATCTTG 5578 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | || | ||||| | | ||| ||||| | || | || || Sbjct 5577 AATCTTCGCCTTCACGTTGTCGATTGTGTCTGATGATTCGACTTCGAGTGTGATGGTTTT 5518 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||||| ||||| |||||||| Sbjct 5517 TCCGGTTAGGGTTTTGACGAAGATTTGCAT 5488 >seq1436 Length=88924 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | ||| | ||| ||||||||||| |||||||||||| Sbjct 7265 GCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 7324 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| |||||| |||||||| || || |||| ||||| ||||| || || || Sbjct 7325 AAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 7384 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||| ||| | | || | ||||| | || |||||| Sbjct 7385 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATTCTAC 7444 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || |||||||| | ||||| || || || ||||| Sbjct 7445 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||| ||||||||||| |||||||||||| | || | ||||||||||||||| || Sbjct 39022 TGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCC 39081 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || |||| ||||| || || || || || || ||||| ||||| ||||| ||| Sbjct 39082 GGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTT 39141 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||| | || |||||| || | || | || |||||||| | || Sbjct 39142 GACGTTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGT 39200 Query 143167 TTTTACGAATATTTGCAT 143184 ||| ||||| || ||||| Sbjct 39201 TTTCACGAAGATCTGCAT 39218 >seq933 Length=173040 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||||||| ||||| | || ||||| ||||| ||||| ||||| Sbjct 29923 CCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 29864 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| ||||| ||||||||| |||| || | |||||||||||||| Sbjct 29863 AGTGTCCTACCATCTTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGG 29804 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | || | || || | || || Sbjct 29803 ATACCTTCCTTATCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 29744 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||| || || || || |||||||| Sbjct 29743 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTCACAAAAATTTGCAT 29697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||||| |||||||| || || ||||||||||| ||| | || || || || Sbjct 29449 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTTCCATCCTC 29391 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || || ||| |||| || | |||||||| ||||| ||||| |||||||| Sbjct 29390 AAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATGCCCTCTTTGTCCTG 29331 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | || || | || ||| || |||| || | || || Sbjct 29330 GATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAACCTCAAGGGTGATGGTTTT 29271 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || |||||||| ||||| Sbjct 29270 TCCAGTCAAGGTCTTAACGAATATCTGCAT 29241 >seq37 Length=1182629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| | ||||| || || || || || ||||||||||| Sbjct 292903 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGCA 292962 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | || || || || |||| |||||||||||||| ||||| Sbjct 292963 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGGA 293022 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 293023 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACC 293082 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 293083 TCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 >seq1740 Length=56962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | ||||| | || | ||||| |||||||| || || ||||||||||| Sbjct 42770 GCCTCCCCTCAAACGAAGGACAAGATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGC 42829 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| | ||||| || || || |||||| | |||| | |||||| || ||||| Sbjct 42830 CAATGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGAGG 42889 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || ||||| | || | |||||| | || || Sbjct 42890 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATCGTGTCTGAACTCTCAAC 42949 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || |||||||| ||||| || || |||||| Sbjct 42950 CTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTTACAAAAATCTGCATA 42998 >seq322 Length=397916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTT 143033 ||| ||||||| |||||||| || || ||||||||||| ||| | || || || | Sbjct 333657 AACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTTCCATCCT 333715 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | ||||| || || ||| |||| || | |||||||| ||||| ||||| |||||||| Sbjct 333716 CAAGTTGCTTCCCTGCAAAGATAAGCCACTGCTGATCAGGAGGGATGCCCTCTTTGTCCT 333775 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 || || || | | || | || || | || ||| || |||| || | | | Sbjct 333776 GGATCTTGGCCTTGACATTATCAATTGTATCTGAGGATTCAACCTCAAGGGTGATAATTT 333835 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||||| || || |||||||| |||||| Sbjct 333836 TGCCAGTCAAGGTCTTAACGAATATCTGCATA 333867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||||| |||||||| || || ||||||||||| ||| | || || || || Sbjct 312549 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTTCCATCCTC 312607 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || || ||| |||| || | |||||||| ||||| ||||| |||||||| Sbjct 312608 AAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATGCCCTCTTTGTCCTG 312667 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | || || | || ||| || |||| || | || || Sbjct 312668 GATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAACCTCAAGGGTGATGGTTTT 312727 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || |||||||| ||||| Sbjct 312728 TCCAGTCAAGGTCTTAACGAATATCTGCAT 312757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506840595463680