Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1436 95.1 8e-15 seq1039 84.2 1e-11 >seq1436 Length=88924 Score = 95.1 bits (104), Expect = 8e-15 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 33152 AACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT 33211 ||||| | ||| ||||| | || |||||||| || ||||| ||||| | ||| |||| Sbjct 38774 AACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCG-CAA---GAGT 38829 Query 33212 TGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCC 33267 | || ||||||||||| || ||| || || || ||||| || | || || || Sbjct 38830 TCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGGATTCC 38889 Query 33268 TTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 |||||| || |||| | || || | | || |||||| || || ||| || || Sbjct 38890 TTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAACTTCGAG 38949 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || |||||||| || || ||||| || || ||||||||| Sbjct 38950 TGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCATG 38992 Score = 91.5 bits (100), Expect = 9e-14 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TC 33216 |||||||| | || |||||||| || ||||| ||||| | ||| ||||| || Sbjct 7056 ACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCG-CAA---GAGTTCTCCCATC 7111 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||||||||| || ||| || || || ||||| || | || || |||||||| || Sbjct 7112 TTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGAATTCCTTCTTTATC 7171 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| | || || | | || ||||| || || ||| || || || || || Sbjct 7172 CTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAACTTCGAGTGTGATGGT 7231 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||| || || ||||| ||||| ||||||||| Sbjct 7232 TTTTCCAGTTAGGGTTTTGACGAAGATTTGCATG 7265 >seq1039 Length=240209 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || || || | |||| ||| | || || || || || || |||||||||| Sbjct 128847 ACCTCCCCTCAAACGAAGGACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGC 128906 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || | ||||||||| ||| || || | |||||| |||| ||| Sbjct 128907 CAAGGTACGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGG 128966 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || || || ||| |||| | || | | ||||||||| | | Sbjct 128967 AATTCCCTCCTTATCCTGTATCTTAGCCT---TCACATTGTCAATCGTGTCTGAGCTCTC 129023 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| |||||| || || || ||||||||||| |||||||| ||||| Sbjct 129024 AACCTCCAAAGTTATTGTCTTACCGGTAAGAGTTTTCACGAAAATCTGCAT 129074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318671054962752