Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq933 104 2e-17 seq322 98.7 7e-16 seq1436 96.9 2e-15 >seq933 Length=173040 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | ||||||||| || || || || || || || ||||| | Sbjct 29695 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT 29636 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | ||| || |||||||| || | || ||||| || |||| Sbjct 29635 AGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGGGAGGG 29576 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| ||||| ||| || ||| || || ||| |||||||| ||| || Sbjct 29575 ATACCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 29516 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || ||||||||||||||||| || ||||| Sbjct 29515 TCTAAAGTAATAGTCTTCCCTGTTAAAGTCTTCACAAAAATCTGCAT 29469 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CAT 43967 || |||||||| || ||| || ||||| || |||||||| || || | || ||| Sbjct 29908 AAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGC-AAGTGTC-CTACCAT 29851 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | || | ||| || || ||||| || | || ||||| || |||| | |||||| |||| Sbjct 29850 CTTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGGATACCTTCCTTAT 29791 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 | ||| || ||| || || ||| |||||||| ||| || || | || || | Sbjct 29790 CCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTGATAG 29731 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || |||||||||||||| |||||||| Sbjct 29730 TCTTTCCTGTCAAAGTCTTCACAAAAATTTGCAT 29697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| ||||| || ||| |||| ||||| || || || ||||| Sbjct 30343 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTACCGGCAAAA 30284 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || |||||||| | || | ||| || |||||| ||| ||| ||| || || Sbjct 30283 ATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGAATCTTTGCTTTCACATTA 30224 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | ||||| || | ||||| || || || || | ||||||||| Sbjct 30223 TCGATTGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCAGTAAGGGTCTTCACA 30164 Query 44111 AATATTTGCATG 44122 |||||||||||| Sbjct 30163 AATATTTGCATG 30152 >seq322 Length=397916 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | ||||||||| || || || || || || || ||||| | Sbjct 312303 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTGCT 312362 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | |||||| |||||||| || | || ||||| || |||| Sbjct 312363 AGGGTTCTTCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGG 312422 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| ||||| ||| || ||| || || | | |||||||| ||| || Sbjct 312423 ATTCCTTCCTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACC 312482 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || ||||||||||||||||| || ||||| Sbjct 312483 TCTAAAGTAATAGTCTTTCCTGTTAAAGTCTTCACAAAAATCTGCAT 312529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| | |||||||| || || || || || || || ||||| | Sbjct 312075 CCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAGCT 312134 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | ||||| |||||||| || | || ||||| || |||| Sbjct 312135 AGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGG 312194 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || |||||||| ||| || ||| || || | | |||||||| ||| || Sbjct 312195 ATTCCCTCTTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACC 312254 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 312255 TCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312301 >seq1436 Length=88924 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | ||| | | ||| ||||| |||||| |||||| || ||||||||||| Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCA 38824 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 38825 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGG 38884 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| ||| || || || | | | || || | | || || Sbjct 38885 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAACT 38944 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 |||| || || ||||| || |||| || || ||||| ||||||||| || Sbjct 38945 TCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCATGCCG 38995 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | ||| || | |||||||| ||||| |||||| || ||||||||||| Sbjct 7038 CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGCA 7097 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| |||||||| || |||||||| ||||| || ||||| || |||| Sbjct 7098 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 7157 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| ||| || || || | | | || || | | || || Sbjct 7158 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAACT 7217 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 |||| || || ||||| || |||| || || || || ||||||||| || Sbjct 7218 TCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCATGCCG 7268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354659022682752