Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq322 107 2e-18 seq933 93.3 4e-14 >seq322 Length=397916 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| |||| || || |||||||| || || || || ||||| || Sbjct 333183 CCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGCC 333242 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||| || ||||| ||| |||| |||||||| || || | || Sbjct 333243 AGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGGA 333302 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || ||||| || ||||||| |||||| | | ||| || |||| | || Sbjct 333303 ATACCCTCTTTATCCTGAATTTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCAACC 333362 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || || | || || |||||||||||||| Sbjct 333363 TCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | |||||||| || |||||||| || |||||||||||||| Sbjct 312073 TTCCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAG 312132 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | ||||| || ||| | ||||||||||| ||||| | Sbjct 312133 CTAGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAG 312192 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || ||||| || ||| || |||||| | | | || ||| | || Sbjct 312193 GGATTCCCTCTTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAA 312252 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| ||||| || ||||| || || ||||||||||||||| Sbjct 312253 CCTCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCATT 312302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | ||||||||| || |||||||| || |||||||||||||| Sbjct 312301 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTG 312360 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | |||||| || ||| | ||||||||||| ||||| | Sbjct 312361 CTAGGGTTCTTCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAG 312420 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| || || ||| || |||||| | | | || ||| | || Sbjct 312421 GGATTCCTTCCTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAA 312480 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| || || || || || || || |||||||| |||||| Sbjct 312481 CCTCTAAAGTAATAGTCTTTCCTGTTAAAGTCTTCACAAAAATCTGCATT 312530 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | ||||||||| || |||||||| || || ||||||||||| Sbjct 312529 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 312588 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | ||| || || ||| | ||||||||||| ||||| | Sbjct 312589 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 312648 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| |||||||| || || || || | ||| | |||| | ||| Sbjct 312649 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAA 312708 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| || || || || || ||||| Sbjct 312709 CCTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCAT 312757 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || | ||||| || ||| | || || || || || ||||| ||||||||||| | Sbjct 312759 CCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCA 312818 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||| |||||||| || ||| | |||||||| || ||||| || Sbjct 312819 AGGGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGGA 312878 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| || || ||| || | | | | | ||| | ||| Sbjct 312879 ATCCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCTATGGTATCAGAAATCTCCACC 312938 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| |||||||| ||||| || ||||||||||| Sbjct 312939 TCAAGGGTGATGGTTTTACCGGTCAATGTTTTCACGAAAATTTGCAT 312985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||||| |||||| | || || || || || ||||| ||||||||||| | Sbjct 333868 CCACCTCTTAACCGCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTGCA 333927 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||| |||||||| || || | |||||||| || ||||| || Sbjct 333928 AGGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTGGA 333987 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| || || ||| || | | | | | ||| | |||| Sbjct 333988 ATCCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCGCC 334047 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || |||| ||||| || ||||||||||| Sbjct 334048 TCAAGGGTGATGGTTTTACCCATCAATGTTTTCACGAAAATTTGCAT 334094 >seq933 Length=173040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| || || ||||| ||||| ||||| ||||| | | || || ||| Sbjct 29909 CAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGTGTCCTACCATC 29850 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| | ||| || || ||| | ||||||||||| |||||| || | ||||| || || Sbjct 29849 TTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGGATACCTTCCTTATC 29790 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || |||||| | ||| || ||| | || |||| || || || Sbjct 29789 CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTGATAGT 29730 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || ||||| || || ||||||||||||||| Sbjct 29729 CTTTCCTGTCAAAGTCTTCACAAAAATTTGCATT 29696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | ||||||||| || |||||||| || || ||||||||||| Sbjct 29697 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 29638 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | ||| || || ||| | ||||||||||| |||||| | Sbjct 29637 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGGGAG 29578 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| || || ||| || |||||| | ||| || ||| | || Sbjct 29577 GGATACCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCAA 29518 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||||| || || || || || || || |||||||| |||||| Sbjct 29517 CCTCTAAAGTAATAGTCTTCCCTGTTAAAGTCTTCACAAAAATCTGCATT 29468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || | ||||| || ||| | || || || || || ||||| ||||||||||| | Sbjct 29239 CCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCA 29180 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || ||||||||||||||| || ||| | |||||||| || ||||| || Sbjct 29179 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGA 29120 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| || || ||| || | | | | | ||| | ||| Sbjct 29119 ATCCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCACC 29060 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||||||||| ||||| ||||| || ||||||||||| Sbjct 29059 TCAAGGGTGATGGTTTTGCCAGTCAATGTTTTCACGAAAATTTGCAT 29013 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || | ||||||||| || |||||||| || || ||||||||||| Sbjct 29469 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 29410 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | ||| || || ||| | ||||||||||| ||||| | Sbjct 29409 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 29350 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| |||||||| || || || || | ||| | |||| | ||| Sbjct 29349 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAA 29290 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || ||||| || || || || || ||||| Sbjct 29289 CCTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCAT 29241 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| ||||| || | |||||||| || || || || ||||| || Sbjct 30151 CCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCC 30092 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||| || || || ||| |||| |||||||| || || || Sbjct 30091 AGAGTACGACCATCTTCCAACTGCTTCCCGGCAAAAATTAGCCTCTGCTGGTCTGGAGGA 30032 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || ||||| || ||||||| ||||| | | ||| | |||| | || Sbjct 30031 ATACCCTCTTTATCCTGAATTTTTGCCTTCACATTGTCAATTGTATCGGAACTCTCAACC 29972 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || || || | || || |||||||||||||| Sbjct 29971 TCCAATGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 29925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419446961370144