Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1210 260 1e-64 seq520 233 2e-56 seq6 87.8 2e-12 >seq1210 Length=122563 Score = 260 bits (288), Expect = 1e-64 Identities = 576/856 (67%), Gaps = 17/856 (2%) Strand=Plus/Minus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| ||| ||||| |||| ||| | || ||||||||||| ||||| || | Sbjct 43140 CATAACAGAAGCTTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTG 43081 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-- 12964 | |||||| ||||| |||| |||||||| | ||||| || | |||| ||| Sbjct 43080 AAGCGAAATCAAATCCATCCAATCAAAAGGATTCT--GAACATTATAAATTTTCCCACAA 43023 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | || |||||||| |||||||||||||| || ||||| |||| ||||||| Sbjct 43022 CCAAGCTCACACAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCA 42963 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 |||||||| | ||| ||| | ||||| | ||| | | | || || ||||| Sbjct 42962 TTCATTCCAACTAAAGCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACA 42903 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCT---CTAATGGAGGATTTGATAGATGCTTA 13141 || ||| || || |||| ||| ||| |||| | ||| | | || | Sbjct 42902 GCATCGCGCACAATCG-TCTTCACACGCTCTTCGCTAA--GTTTCTTTCTCAAAAGCGAA 42846 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | |||| ||| ||||||||||| || | |||||| || | || |||||||||||| Sbjct 42845 TAAATCAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAA 42786 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| ||| ||||| | || |||||||||| ||| || || ||| || || Sbjct 42785 AAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCA 42726 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || |||||||| |||||||| ||||| || | | ||||||| || | | | | | Sbjct 42725 GAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGAT 42666 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | || ||||| || | ||||| | ||||| | | ||| || || |||| Sbjct 42665 GAA---TCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCA 42609 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCTATCAATA 13439 ||||| | ||| ||| ||| || || |||| || |||||||| || ||||| | Sbjct 42608 ATTGCATGAAACAAACGATTCTTCTC--AACTGAATCATTGATATAAGTCTCAATCAAGA 42551 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 ||||||||||| ||||||||||| || || || || ||||| || || ||| | | Sbjct 42550 GACTATACATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCG 42491 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 ||||||| || |||||||| |||||| |||| | || || || || |||| Sbjct 42490 CCTCTGAGACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGT 42431 Query 13560 CACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACT 13619 | ||| ||||| || ||||| | ||| ||||| | |||| || | | | Sbjct 42430 CGGAAGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGT 42371 Query 13620 TTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAA 13679 | ||| | ||| ||||| |||||||| || || || ||||||| |||||||| Sbjct 42370 TGTTCCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTT 42311 Query 13680 CAGCCTTCTTATACAT 13695 | || || || ||||| Sbjct 42310 CGGCTTTTTTGTACAT 42295 >seq520 Length=294854 Score = 233 bits (258), Expect = 2e-56 Identities = 571/856 (67%), Gaps = 17/856 (2%) Strand=Plus/Plus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| ||| |||||||| | ||| | || ||||||||||| ||||| || | Sbjct 261789 CATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTG 261848 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT--ACAC 12964 | ||||| |||||| |||| |||||||| | ||||| || | ||||| ||| Sbjct 261849 AAGTGAAATCAATTCCATCCAATCAAAAGGATTCT--GAACATTATAAATTTTTCCACAA 261906 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | ||| || ||||| |||||||||||||| || || || |||| ||||||| | Sbjct 261907 CCAAGTTCACCCAATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCG 261966 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 |||||||| | || ||| | ||||| | ||| | | | || || ||||| Sbjct 261967 TTCATTCCAACCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACC 262026 Query 13085 GCTTCGATAACTATGTCTCTTATTACG---TTCTCTAATGGAGGATTTGATAGATGCTTA 13141 || || ||| || | || ||| ||| |||| | ||| | | || | Sbjct 262027 GCATCACGAACAAT-AGTTTTCACACGCTCTTCACTAA--GTTTCTTTCTCAAAAGCGAA 262083 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | | | ||| ||||||||||| || | ||||| || | || |||||||||||| Sbjct 262084 TAAAGTAAACAAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAA 262143 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAACGAAC 13259 || |||| ||| ||||| | || |||||||||| |||||| || | ||| |||| || Sbjct 262144 AAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAG-AAAC-TAC 262201 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | || |||||||| |||||||| ||||| || | | |||||| || | | | | Sbjct 262202 CGGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAG 262261 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | | || ||||| || | ||||| | ||||| | || || || | | Sbjct 262262 ATGAA---TCGATCCATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGT 262318 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | ||||| | ||||||| ||| ||||| || || |||||||| || ||||| | Sbjct 262319 CAATTGCATGAAATAAACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGA 262378 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 ||||||||||| |||||||| ||||| ||||| || |||||||| ||||| | | Sbjct 262379 GACTATACATTTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTG 262438 Query 13500 CCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGT 13559 |||| || || |||||||| |||||| | || | || || ||||| |||| Sbjct 262439 CCTCAGAGACTTGAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGT 262498 Query 13560 CACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACT 13619 | || ||||| |||||||| | ||| || || | |||| || | | | Sbjct 262499 CGGAGGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGT 262558 Query 13620 TTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAA 13679 | ||| | |||| ||||| ||| | ||| || || || | ||||| || ||||| Sbjct 262559 TGTTCCAGTGAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTT 262618 Query 13680 CAGCCTTCTTATACAT 13695 | || || || ||||| Sbjct 262619 CGGCTTTTTTGTACAT 262634 >seq6 Length=1263909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 ||| || |||||||||||||| | || ||||||||| ||||| || ||||| ||||| Sbjct 1160348 CATGCAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGT 1160407 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 ||||| ||||| | |||| ||||||| ||| ||||| ||| Sbjct 1160408 CAGACCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 1160450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430838352752448