Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1740 102 7e-17 seq1039 100 2e-16 seq37 100 2e-16 seq1436 86.0 5e-12 seq322 82.4 6e-11 >seq1740 Length=56962 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | | ||| ||||| || ||| ||||||||| ||||||||||||| Sbjct 21664 ACCACCGCGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAG- 21606 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || ||| | ||||||| |||||| || | |||| | ||||||||| || | Sbjct 21605 CAAGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTG 21546 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| || ||| || || | | |||||||||| | | ||| Sbjct 21545 GGATCCCTTCCTTATCTTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCAA 21486 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || ||||||||||| ||||| || || ||||| || |||||| Sbjct 21485 CTTCGAGAGTAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCATC 21436 >seq1039 Length=240209 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| || ||| ||||||||| || |||||||||| ||| || ||| |||||| Sbjct 129321 CACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAG-CAAGGGTACGCCCGTCCT 129379 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | ||||||||| || || | | |||||| || Sbjct 129380 CCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCTT 129439 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 129440 GAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 129499 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| || || || || || |||||| Sbjct 129500 TGCCGGTGAGGGTCTTAACGAAGATTTGCATC 129531 >seq37 Length=1182629 Score = 100 bits (110), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| |||| | | || | |||||| ||| |||||| || |||||||||||||| Sbjct 292902 ACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGC 292961 Query 48559 CAATTGTCGCTC-GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||| |||| |||||| ||| || | || | ||| ||||||||| | Sbjct 292962 -AAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAG 293020 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | |||||||||| || || |||| | | || ||||| || | || Sbjct 293021 GAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCG--ATGGTGTCAGAGCTTTC 293078 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||| | || ||||| || ||||||||||||||||| || || |||||| Sbjct 293079 CACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCATC 293130 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| ||||| ||||| ||||| || ||| || ||||||| ||| Sbjct 291737 TGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGC-AAGGGTCCTTCCATCCTCCAACTG 291795 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | ||||||||| || | || |||||| ||| |||||| Sbjct 291796 CTTCCCTGCAAAGATCAACCTCTGCTGATCAGTGGGGATACCTTCCTTATCCTGAATTTT 291855 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | |||||||| | |||| ||| | || ||||| ||||| || Sbjct 291856 GGCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTACCAGT 291915 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| || |||||||||||||| Sbjct 291916 CAAAGTCTTAACAAAAATCTGCAT 291939 >seq1436 Length=88924 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCT 48581 ||| |||||| || ||||| ||||||||||| || | | || || |||| || || | Sbjct 7289 ATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGC-CGTCTTCAAGTT 7347 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | || ||| || | || | ||||||||| || || | | ||||||||| |||| Sbjct 7348 GTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATTT 7407 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | |||| | | || ||||| || | || || ||| | ||||||||||| || Sbjct 7408 TGGCTTTGACGTTGTCG--ATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTGCC 7465 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||||||||| |||||||| Sbjct 7466 GGTTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| ||||||| | |||||||||||| ||| ||| || || || || ||||| || Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCA 38824 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | | || |||| ||||| || | | || || ||||||||||| || Sbjct 38825 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGG 38884 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||| || ||| ||| ||| ||| | | | || || || |||| || || Sbjct 38885 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCAA 38942 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||| |||||||| || || || ||||| ||||| || ||||| Sbjct 38943 CTTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 >seq322 Length=397916 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 48509 AACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CG 48567 |||| ||||| | ||||| ||| ||||||||| ||||||||||| || || || || Sbjct 333877 AACCGCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTGC-AAGGGTGCG 333935 Query 48568 CTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTC 48627 | || || | || |||||| || | || | | |||||||| || | | ||| Sbjct 333936 GCCATCTTCTAATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTC 333995 Query 48628 CTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTG 48686 |||||| || || |||| | | | |||||||||| | | ||||| ||| | | Sbjct 333996 CTTGTCTTGGATCTTA-GCTTTAACGTTGTCTATGGTATCAGAACTCTCCGCCTCAAGGG 334054 Query 48687 TTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||||||||| | | |||||||| ||||| |||||| Sbjct 334055 TGATGGTTTTACCCATCAATGTTTTCACGAAAATTTGCATC 334095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421110405211424