Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1384 122 5e-23 seq367 122 5e-23 seq481 120 2e-22 seq318 118 6e-22 seq496 116 2e-21 seq298 116 2e-21 seq160 116 2e-21 seq38 116 2e-21 seq25 116 2e-21 seq3 116 2e-21 seq78 114 7e-21 seq1021 113 2e-20 seq662 113 2e-20 seq552 113 2e-20 seq140 113 2e-20 seq100 113 2e-20 seq677 111 8e-20 seq472 111 8e-20 seq1322 105 3e-18 seq194 105 3e-18 seq634 104 1e-17 seq69 86.0 3e-12 >seq1384 Length=137462 Score = 122 bits (134), Expect = 5e-23 Identities = 88/100 (88%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 11433 ATAGAATTAA-TAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||| |||||| |||||||| ||| ||||||||| | | |||||||| |||||||||| Sbjct 112913 ATAAAATTAACTAAAAAATGTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 112972 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||||||||||||||||||| Sbjct 112973 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 113012 >seq367 Length=273798 Score = 122 bits (134), Expect = 5e-23 Identities = 92/107 (86%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 11424 CAGGGAAATATAGAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGA 11482 ||| |||| | ||||||| ||| | || ||| ||||||||| | | |||||||| ||| Sbjct 52917 CAGAGAAAAAGAGAATTACATAGAGAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGA 52860 Query 11483 CCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 52859 CCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 52813 >seq481 Length=311705 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||||||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 39910 AAAAAATCAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 39969 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 39970 CGCTCTAACCAACTGAGCTAATGGGCC 39996 >seq318 Length=400206 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || |||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 324386 AATAAAATATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 324328 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 324327 GACGCTCTAACCAACTGAGCTAATGGGCC 324299 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||| |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 325505 AAAAAATAAAAT-GGCCCATGTAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 325447 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 325446 GCTCTAACCAACTGAGCTAATGGGCC 325421 Score = 100 bits (110), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || |||| ||| |||| ||| | |||||| |||||||| |||||||||||| Sbjct 323611 AATAAAATATAAAAT-GGCTCATGCAAGTCTTGAACCTGCGACCTTCACGTTATTAGCAC 323553 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 | |||||| ||||||||||||||||| || Sbjct 323552 GGCGCTCTAACCAACTGAGCTAATGGACC 323524 >seq496 Length=317891 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 188696 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 188755 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 188756 CAACTGAGCTAATGGGCC 188773 >seq298 Length=420816 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | ||||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 121474 TAAAAAATAACTATTGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACG 121415 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 121414 ACGCTCTAACCAACTGAGCTAATGGGCC 121387 Score = 113 bits (124), Expect = 2e-20 Identities = 77/86 (90%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 121026 AAAAATAATGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 120967 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 120966 GCTCTAACCAACTGAGCTAATGGGCC 120941 >seq160 Length=609282 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 299916 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 299857 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 299856 CAACTGAGCTAATGGGCC 299839 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||||||||||||| | | |||||||| |||||||||||||||||||||||| | Sbjct 298832 AAAACAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACAC 298773 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 298772 TCTAACCAACTGAGCTAATGGGCC 298749 >seq38 Length=1544471 Score = 116 bits (128), Expect = 2e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 |||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 148270 AAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 148211 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||| Sbjct 148210 CTAACCAACTGAGCTAATGGGCC 148188 Score = 113 bits (124), Expect = 2e-20 Identities = 86/101 (85%), Gaps = 6/101 (6%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATC-AAATT-----GGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || || |||||||||| ||||| |||||||| | | |||||||| ||||||||| Sbjct 392609 AGTATGAATAAAAAATTGAAATTTAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 392550 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 392549 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 392509 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| ||| ||||||||| | | || ||||| |||||||||||||||||||| Sbjct 144466 AATGAAAAATAAAAAATGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCA 144407 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 144406 CGACGCTCTAACCAACTGAGCTAATGGGCC 144377 >seq25 Length=69056 Score = 116 bits (128), Expect = 2e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| || |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 22694 AAAATCAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 22635 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 22634 CTCTAACCAACTGAGCTAATGGGCC 22610 >seq3 Length=2878652 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| || |||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1471925 ATAAAATATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1471983 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 1471984 ACGCTCTAACCAACTGAGCTAATGGGCC 1472011 >seq78 Length=963227 Score = 114 bits (126), Expect = 7e-21 Identities = 81/93 (87%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCA----AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||||||||| || ||||||||| | | |||||||| ||||||||||||||||| Sbjct 907718 AAAAAAAAATCACAAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 907777 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 907778 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 907810 >seq1021 Length=156242 Score = 113 bits (124), Expect = 2e-20 Identities = 77/87 (89%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11446 AAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||| |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 105022 AAAATGAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 105081 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 105082 CGCTCTAACCAACTGAGCTAATGGGCC 105108 >seq662 Length=244491 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 95242 AAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 95183 Query 11505 CTCT----RACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 95182 CTCTAACCAACCAACTGAGCTAATGGGCC 95154 >seq552 Length=364834 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 9752 AATAAAACAAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 9811 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 9812 GACGCTCTAACCAACTGAGCTAATGGGCC 9840 >seq140 Length=664520 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||| | |||| |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 205553 AAAATAACAAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 205612 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 205613 ACGCTCTAACCAACTGAGCTAATGGGCC 205640 >seq100 Length=749720 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||| ||| | |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 499727 AATAACAAAATATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 499668 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 499667 GACGCTCTAACCAACTGAGCTAATGGGCC 499639 >seq677 Length=443819 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 255604 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 255663 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 255664 CTGAGCTAATGGGCC 255678 >seq472 Length=314569 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 202256 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 202197 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 202196 CTGAGCTAATGGGCC 202182 >seq1322 Length=106565 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| |||| || |||||||| | | |||||||| ||||||| ||||||||||||| Sbjct 84637 AAAAATTCAACTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACC 84696 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||| |||||||||||||||||||| || Sbjct 84697 ACGCTCTAACCAACTGAGCTAATGGGCCTTC 84727 >seq194 Length=307337 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 290263 TTGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 290204 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 290203 CTGAGCTAATGGGCC 290189 >seq634 Length=248963 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| ||||||||| | | | |||||| ||||||||||||||||||||||||||||| Sbjct 233854 ATAAAAATGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 233795 Query 11509 RACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 233794 AACCAACTGAGCTAATAGGCC 233774 >seq69 Length=275511 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||| |||| Sbjct 143578 TCGAACCTGCGACCTTCGTGTTATTAGCGCGACGCTCTAACCAACTGAGCTAATAGGCC 143520 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261403801796224