Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq34 154 2e-33 seq470 152 8e-33 seq951 141 1e-29 seq151 141 1e-29 seq27 129 9e-26 seq411 109 9e-20 seq628 102 1e-17 >seq34 Length=1258076 Score = 154 bits (170), Expect = 2e-33 Identities = 181/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| |||||||| || |||||||| || |||||||| |||||| | || Sbjct 624790 CTTCGCGATAACATTCAAGGAATAACAAAGCCAGCGATTCGTCGTCTTGCTCGTAGAGGA 624731 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || ||| || ||| ||| |||||||||| | |||| ||||||||||| || Sbjct 624730 GGAGTGAAACGTATCAGTGGTTTGATCTATGAAGAAACACGTGGCGTTTTGAAGATATTT 624671 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||||| | ||||||| | ||||| || || |||| | || ||||| Sbjct 624670 TTGGAGAATGTTATTCGTGATGCTGTTACTTATACTGAACATGCTAGGAGAAAAACTGTT 624611 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| ||||| | ||||| | | ||||||| ||||| Sbjct 624610 ACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGAACTCTTTATGGATTTGGT 624551 Query 16694 AGTTA 16698 |||| Sbjct 624550 GGTTA 624546 >seq470 Length=315685 Score = 152 bits (168), Expect = 8e-33 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| |||||||| || ||||| || || |||||||| ||| | ||||| Sbjct 54616 TCTTCGTGATAACATTCAAGGAATAACAAAGCCTGCAATTCGTCGTCTCGCTAGACGTGG 54557 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| || || || | |||||||| | ||||| |||| | |||||||| Sbjct 54556 TGGTGTGAAGCGTATCAGCGGTTTAATTTATGAAGAAACTCGTGGTGTTCTCAAGATCTT 54497 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| || | ||||||| | |||||| ||||| ||| ||||||||||| Sbjct 54496 TCTTGAGAACGTGATTCGTGATGCTGTTACCTATACTGAGCATGCTCGCCGTAAGACTGT 54437 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 54436 TACTGCGATGGATGTTGTTTATGC 54413 >seq951 Length=170932 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || || || || ||||| |||||||| ||| | |||||||| | Sbjct 119947 GAGATAACATTCAAGGTATTACTAAACCTGCTATTCGTCGTCTTGCTAGGCGTGGTGGTG 119888 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | || ||| | ||| ||| |||||||||| | |||| ||| | ||||| ||||| Sbjct 119887 TTAAACGTATAAGTGGTTTGATCTATGAAGAAACACGTGGCGTTCTCAAGATATTCCTTG 119828 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||| | ||||||| | ||||| || || ||| ||||| ||||| || Sbjct 119827 AGAATGTTATTCGTGATGCTGTTACTTATACTGAACATGCTCGTCGTAAAACTGTTACTG 119768 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| | ||| | ||||| | | ||||||||||||| ||| Sbjct 119767 CTATGGATGTTGTTTATGCTCTCAAAAGACAAGGAAGGACCCTTTATGGTTTTGGTGGTT 119708 Query 16698 A 16698 | Sbjct 119707 A 119707 >seq151 Length=418712 Score = 141 bits (156), Expect = 1e-29 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || ||||| || || |||||| | ||| | | || Sbjct 30932 TCTTCGTGACAACATCCAAGGCATTACAAAGCCTGCAATTCGTCGTTTAGCTAGAAGAGG 30873 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| ||| |||||||||| | ||||| |||| | |||||||| Sbjct 30872 TGGTGTCAAGAGAATCAGTGGTTTGATCTATGAAGAAACTCGTGGTGTTCTCAAGATCTT 30813 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| || | ||||||| | || || |||||||||| | || || || Sbjct 30812 TCTAGAGAACGTGATTCGTGATGCTGTTACTTACACTGAGCACGCTAGGAGGAAAACCGT 30753 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | || ||||| ||||| | || || | | |||| ||||| || Sbjct 30752 TACCGCCATGGATGTTGTTTATGCTTTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 30693 Query 16693 AAGTTAAT 16700 ||| || Sbjct 30692 TGGTTGAT 30685 Score = 141 bits (156), Expect = 1e-29 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || ||||| || || |||||| | ||| | | || Sbjct 38993 TCTTCGTGACAACATCCAAGGCATTACAAAGCCTGCAATTCGTCGTTTAGCTAGAAGAGG 38934 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || |||||| | || ||| ||| |||||||||| | ||||| |||| | |||||||| Sbjct 38933 CGGTGTCAAGAGAATCAGTGGTTTGATCTATGAAGAAACTCGTGGTGTTCTCAAGATCTT 38874 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | ||||||| | || || |||||||||| | || || || Sbjct 38873 TCTCGAGAACGTGATTCGTGATGCTGTTACTTACACTGAGCACGCTAGGAGGAAAACCGT 38814 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| |||| ||||| ||||| | || || | | |||| ||||| || Sbjct 38813 TACCGCTATGGATGTCGTTTATGCTTTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 38754 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 38753 TGGTTGATTTT 38743 Score = 129 bits (142), Expect = 9e-26 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||| || || ||||| || || |||||| | ||| | | || Sbjct 36182 TCTTCGTGACAACATCCAAGGCATTACTAAGCCTGCAATTCGTCGTTTAGCTAGAAGAGG 36123 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||| | || ||| | |||||||||| | ||| | |||| | |||||||| Sbjct 36122 TGGTGTCAAGAGAATCAGTGGTCTCATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTT 36063 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| || | ||||||| | || || |||||||||| | || || || Sbjct 36062 TCTAGAGAACGTGATTCGTGATGCTGTTACTTACACTGAGCACGCTAGGAGGAAAACCGT 36003 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | || ||||| ||||| | || || | | |||| ||||| || Sbjct 36002 TACCGCCATGGATGTTGTTTATGCTTTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 35943 Query 16693 AAGTTAATCTT 16703 ||| || || Sbjct 35942 TGGTTGATTTT 35932 >seq27 Length=1236959 Score = 129 bits (142), Expect = 9e-26 Identities = 179/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| ||||||||||||||||| || ||||| ||||||| | || Sbjct 300007 TCTTCGTGACAACATCCAGGGAATCACCAAGCCAGCAATTCGTCGATTGGCTCGAAGAGG 299948 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| |||||||||| | | | ||| | |||||||| Sbjct 299947 TGGTGTGAAGAGAATCAGTGGTTTGATCTATGAAGAAACCAGAGGAGTTCTCAAGATCTT 299888 Query 16573 CCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | ||| || || | |||||| || || || || ||||| |||| | ||||||| Sbjct 299887 CTTGGAGAATGTGATTCGTGATGCAGTTACA-TACACTGAGCATGCTAGGAGGAAGACTG 299829 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 | ||| |||||||| | || ||||| | || | ||||| | | | ||||| || | Sbjct 299828 TTACCGCCATGGATGTTGTTTATGCTCTCAAGAGACAAGGAAGAACTCTCTATGGATTCG 299769 Query 16692 GAAGTTAA 16699 || | ||| Sbjct 299768 GAGGCTAA 299761 Score = 120 bits (132), Expect = 5e-23 Identities = 177/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| |||||||||||||| || || ||||| ||||||| | || Sbjct 294701 TCTTCGTGACAACATCCAGGGAATCACCAAGCCTGCGATTCGTCGATTGGCTCGAAGAGG 294642 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| |||||||||| | | | ||| | |||||||| Sbjct 294641 TGGTGTGAAGAGAATCAGTGGTTTGATCTATGAAGAAACCAGAGGAGTTCTCAAGATCTT 294582 Query 16573 CCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | | ||| || || | ||||| || || || || ||||| |||| | ||||||| Sbjct 294581 CTTGGAGAATGTGATTCGAGATGCAGTTACA-TACACTGAGCATGCTAGGAGGAAGACTG 294523 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 | ||| | |||||| | || ||||| | || | ||||| | | | ||||| || | Sbjct 294522 TTACCGCAATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACCCTCTATGGATTCG 294463 Query 16692 GAAGTTAA 16699 || ||||| Sbjct 294462 GAGGTTAA 294455 >seq411 Length=341248 Score = 109 bits (120), Expect = 9e-20 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||||||||| ||||||||||| | | |||| | | || Sbjct 172071 TCTTCGCGATAACATTCAAGGAATCACAAAGCCAGCTATTAGAAGATTGGCGAGAAGAGG 172012 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| ||| ||||||| || | | | ||| | |||||||| Sbjct 172011 TGGTGTGAAGAGAATCAGTGGTTTGATCTATGAGGAAACCAGAGGAGTTCTCAAGATCTT 171952 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | ||| || | |||||| | || || |||||||||| | |||||||| Sbjct 171951 CTTGGAAAACGTGATTCGTGATGCGGTTACGTACACTGAGCACGCTAGGAGGAAGACTGT 171892 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | || ||||| | || | || || | | | ||||||||||| Sbjct 171891 TACCGCCATGGATGTTGTTTATGCTCTAAAGAGACAGGGAAGGACTCTCTATGGTTTTGG 171832 >seq628 Length=251005 Score = 102 bits (112), Expect = 1e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| ||||| || || |||||||| || || | | || | | |||||| Sbjct 135178 CGTGATAACATTCAAGGTATAACGAAGCCAGCGATTCGGAGATTAGCGAGAAGAGGTGGA 135237 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||| | || ||| ||| |||||||||| | | | | ||||||||||||||| | Sbjct 135238 GTGAAGAGAATCAGTGGTTTGATCTATGAAGAAACTAGAGGTGTTTTGAAGATCTTTTTG 135297 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||||||| | ||||| || || |||| | || ||||| || Sbjct 135298 GAGAATGTGATTCGTGATGCTGTTACGTATACTGAACATGCTAGGAGGAAAACTGTTACT 135357 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | || || | | | |||||||||||| || Sbjct 135358 GCTATGGATGTTGTTTATGCTCTTAAGAGACAGGGAAGAACTTTGTATGGTTTTGGAGGT 135417 Query 16697 T 16697 | Sbjct 135418 T 135418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79050126044832