Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq2319 398 2e-106 seq1296 176 1e-39 seq219 123 7e-24 seq318 84.2 6e-12 >seq2319 Length=57875 Score = 398 bits (440), Expect = 2e-106 Identities = 444/588 (76%), Gaps = 4/588 (1%) Strand=Plus/Minus Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGT 19754 |||| ||| ||| || ||||| | | |||||| |||| || || || ||| |||||| Sbjct 18575 CAGCTGCTACTGCAGT-TTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGT 18517 Query 19755 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAAT 19814 |||||||| || |||||||||||||| ||||||||| | ||||| || || || || ||| Sbjct 18516 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 18457 Query 19815 ATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTC 19874 || |||||||||||||| |||||| | ||||| ||||| |||||||| || || || ||| Sbjct 18456 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 18397 Query 19875 TCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTA 19934 |||||||||||| ||||| ||||| | |||| |||||| || || ||| | Sbjct 18396 AGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAA 18337 Query 19935 TCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCA 19994 || ||| | || || | ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 18336 TCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCT 18277 Query 19995 CACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTA 20054 || || || ||||| ||||||| || ||||| ||| |||||| || |||||||||||| Sbjct 18276 CATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTA 18217 Query 20055 CATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGC 20114 |||||||| || ||| ||| || || || || || ||| ||||| | | || ||| | Sbjct 18216 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGT 18157 Query 20115 ACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGG 20173 |||||||||||||| | ||||| ||||| |||||||| || || ||||| | |||| || Sbjct 18156 ACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAA-GG 18098 Query 20174 AAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTAT 20233 |||| || ||||||||| | | || | |||||||| || | |||||||| Sbjct 18097 TCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTAT 18038 Query 20234 GCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||| || || || |||||||| ||||| || || ||||| ||| ||| Sbjct 18037 GCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq1296 Length=110557 Score = 176 bits (194), Expect = 1e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||||||||||||| || |||||||||||||| ||||||||| | ||||| || || || Sbjct 75574 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 75515 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCT 19868 || ||||| |||||||||||||| |||||| | ||||| ||||| |||||||| || || Sbjct 75514 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 75455 Query 19869 CTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAG 19928 || ||| |||||||||||| ||||| ||||| | |||| |||||| || || Sbjct 75454 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 75395 Query 19929 GATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATA 19980 ||| ||| ||| | || || | ||||| ||||| ||||| || | || Sbjct 75394 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq219 Length=535087 Score = 123 bits (136), Expect = 7e-24 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 19332 GGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTC 19391 || |||||||| || | ||||| ||| |||| | | || ||| || ||||| || Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 252221 Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 || || || || || || ||||||||||| ||||| || |||||||| ||||| || || Sbjct 252220 GCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCT 252161 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGA 19511 || | |||||||||||||| ||||| || || | |||| | || || || || Sbjct 252160 CTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGGT 252101 Query 19512 CTGCACTTTTATCCGATCTGGGAAGC 19537 |||||||||| ||||| |||||||| Sbjct 252100 TTGCACTTTTACCCGATATGGGAAGC 252075 >seq318 Length=400206 Score = 84.2 bits (92), Expect = 6e-12 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111 ||| || |||| | ||| ||| || || || || || ||| ||| | | || ||| Sbjct 349086 TTATATCTCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATC 349145 Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATG-TCAA 20170 | ||| |||||||||| | ||| | ||||| |||||||| || || |||||| |||| Sbjct 349146 AGTACTGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAA 349205 Query 20171 CGGAAAGATAATCCCAACATGGGCTGATG-TATTAAATAGAGCTAACCTCGGATTTGAAG 20229 | | |||| || ||||||||| |||||| | |||||||| || | |||| Sbjct 349206 GGTCGTG-TAATTAACACTTGGGCTGATACTATTAACC-GTGCTAACCTTGGTATGGAAG 349263 Query 20230 TTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||||| | || || ||||||| || || | || ||||| ||| ||| Sbjct 349264 TTATGCATAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144394561148544