Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2319 311 1e-79 seq56 152 8e-32 seq22 152 8e-32 seq129 145 1e-29 seq1296 131 3e-25 seq219 100 5e-16 seq318 93.3 7e-14 >seq2319 Length=57875 Score = 311 bits (344), Expect = 1e-79 Identities = 415/577 (72%), Gaps = 0/577 (0%) Strand=Plus/Minus Query 211976 CAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTA 212035 |||| ||| || || ||| | | |||||| | |||||||| || ||||| |||| Sbjct 18575 CAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTA 18516 Query 212036 TGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACA 212095 ||||| |||| || || || || |||||||| ||| | ||||| || || || ||||| | Sbjct 18515 TGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATA 18456 Query 212096 TCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCT 212155 | |||||||| || || || ||| |||||| || ||| | ||||| || | ||||| Sbjct 18455 TTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCA 18396 Query 212156 CTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATT 212215 ||||||||||||||| | || || ||| | ||| | ||||| || | || | Sbjct 18395 GTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAAT 18336 Query 212216 CACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCAC 212275 | ||| | ||||||| ||||| ||||| ||||| || ||||| || || ||||| | Sbjct 18335 CTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTC 18276 Query 212276 ATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTAC 212335 |||| || || || || | |||||||| || || ||||||||| | ||||| Sbjct 18275 ATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTAC 18216 Query 212336 ACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCA 212395 | |||||||| || | |||||||| | || | ||||| ||| | | |||||| | | Sbjct 18215 ATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTA 18156 Query 212396 CAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTA 212455 | ||||| ||||| |||||||||| || || |||||||| || |||||| | |||| Sbjct 18155 CTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTC 18096 Query 212456 AGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGC 212515 || || || |||| |||| || ||||| | || |||||||||||||||||||||| Sbjct 18095 GTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGC 18036 Query 212516 ACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 | ||| | || || || || ||||| || ||| |||| Sbjct 18035 ATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq56 Length=960176 Score = 152 bits (168), Expect = 8e-32 Identities = 272/390 (70%), Gaps = 14/390 (4%) Strand=Plus/Plus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 || ||||||||||| || | ||||| || || || |||||||| || ||| || Sbjct 354496 AAGCCTGAGTATGTCATTGTAGCTGCAGCCAAAGTTGGTGGTATCCATGCCAACAACACT 354555 Query 194644 TATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTG 194701 || || || |||||||| |||| ||| || || ||||| ||||| |||||| ||| Sbjct 354556 TACCCAGCTGATTTCATTGCTAT--CAACCTCCAAATCCAGACCAATGTCATTGATTCTG 354613 Query 194702 CATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761 | ||||| || || | |||||| || |||||| | ||||| |||||||| || ||||| | Sbjct 354614 CTTATCGCAACGGTGCTAAGAAGCTTTTGTTTTTGGGTTCCTCTTGCATTTACCCTAAAT 354673 Query 194762 TTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT- 194820 || || ||| || | || ||| || || || | ||||| || | ||| Sbjct 354674 TTGCACCCCAACCGATCCCCGAAGATGCTTTGCTCACTGGCCCTTTAGAGCCGACAAATG 354733 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG---TCAG 194877 | || ||||||||||| ||||| || || || | ||||||||||| || | ||| Sbjct 354734 AATG-GTATGCAATTGCCAAGATTGCTGGGATCAAAATGTGTCAAGCTTACAGAATTCAA 354792 Query 194878 CAGTA-TGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAA 194936 || | ||| ||||||| ||| ||||| ||||| |||||||||| ||||| || Sbjct 354793 CACAAGTGG----GATGCAATTTCAGGGATGCCGACTAACTTATACGGACCAAATGACAA 354848 Query 194937 TTTTGATATTAATAATGGTCATGTATTACC 194966 ||| || | | ||| ||||| ||||| Sbjct 354849 TTTCCATCCTGAGAATTCACATGTTTTACC 354878 >seq22 Length=166781 Score = 152 bits (168), Expect = 8e-32 Identities = 230/322 (71%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 193833 CCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC-AAAGTTGTA 193891 |||| ||| ||||| ||||| |||||||| || || ||||| | | | | ||||| | Sbjct 81686 CCACAATCTGAAACGACACCGTTTCATCCTCGTTCACCTTACGCCGCATCCAAAGTCGC- 81628 Query 193892 TGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTAT 193951 || ||||| | |||||| ||||| | |||||| | |||| || || || Sbjct 81627 TGCGCATTGGTATACTGTGAATTACCGTGAAGCGTATGGAATTTTCGCTTGTAACGGAAT 81568 Query 193952 TCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACA 194011 |||||||||||| ||||| || | |||||||||| || ||||| | || ||||| | Sbjct 81567 TCTCTTCAATCATGAATCACCTCGCAGAGGTGAGAATTTCGTAACGAGAAAAATTACTCG 81508 Query 194012 AGGTTTATCTAAGA-TCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATG 194070 | | | | |||| || |||||||||||| | |||| ||||| || ||| | | Sbjct 81507 TGCTGT-TGGAAGAATCAAGATTGGATTACAGAGTAAGCTTTTCCTTGGAAACCTTCAAG 81449 Query 194071 CTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAAC 194130 || || ||||||||| || ||||||||||||||||||||||||||| | |||| Sbjct 81448 CTTCAAGAGATTGGGGATTTGCTGGTGATTATGTTGAAGCGATGTGGTTAATGCTTCAAC 81389 Query 194131 AGGATGAACCCGATGATTATGT 194152 | || || | ||||||||||| Sbjct 81388 AAGAGAAAGCTGATGATTATGT 81367 >seq129 Length=684927 Score = 145 bits (160), Expect = 1e-29 Identities = 270/389 (69%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 || ||||||| ||| || | ||||| || || || |||||||| || ||| || Sbjct 133954 AAGCCTGAGTTTGTCATTGTAGCTGCAGCCAAAGTTGGTGGTATCCATGCCAACAACACT 134013 Query 194644 TATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTG 194701 ||||| || |||||||| |||| ||| || || ||||| ||||| |||||| ||| Sbjct 134014 TATCCAGCTGATTTCATTGCTAT--CAACCTCCAAATCCAGACCAATGTCATTGATTCTG 134071 Query 194702 CATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761 | |||||||| || | |||||| || |||||| | ||||| |||||||| || ||||| | Sbjct 134072 CTTATCGTAACGGTGCTAAGAAGCTTTTGTTTTTGGGTTCCTCTTGCATTTACCCTAAAT 134131 Query 194762 TTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT- 194820 || || ||| || | || ||| || ||| || | || || || | ||| Sbjct 134132 TTGCACCCCAACCGATCCCTGAAGATGCTTTGCTTACTGGCCCCTTAGAGCCGACAAATG 134191 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG---TCAG 194877 | || | |||| ||||| ||||| || || || | ||||||||||| || | ||| Sbjct 134192 AATGGT-ATGCTATTGCCAAGATTGCCGGGATCAAAATGTGTCAAGCTTACAGAATTCAA 134250 Query 194878 CAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAAT 194937 || || | | ||||||| ||| ||||| || || ||||||| || ||||| ||| Sbjct 134251 CA-TAAG--TGGGATGCAATTTCAGGGATGCCAACCAACTTATACGGGCCAAATGACAAT 134307 Query 194938 TTTGATATTAATAATGGTCATGTATTACC 194966 || || | | ||| ||||| ||||| Sbjct 134308 TTCCATCCTGAGAATTCACATGTTTTACC 134336 >seq1296 Length=110557 Score = 131 bits (144), Expect = 3e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 212022 ATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCA 212081 ||| ||||| ||||||||| |||| || || || || |||||||| ||| | ||||| || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 212082 AGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGG 212141 || || ||||| || |||||||| || || || ||| |||||| || ||| | ||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 212142 TGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAAC 212201 || | ||||| ||||||||||||||| | || || ||| | ||| | ||||| Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 212202 CACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATA 212260 || | || || ||| | ||||||| ||||| ||||| ||||| || | || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq219 Length=535087 Score = 100 bits (110), Expect = 5e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 252224 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || ||||| || || |||| Sbjct 252223 ATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 252164 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 252163 TCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATT 252104 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGAT 211830 ||||| ||||| || || || |||||||| ||| | ||||| Sbjct 252103 GGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGAT 252062 >seq318 Length=400206 Score = 93.3 bits (102), Expect = 7e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 |||||| | || |||| ||||| ||||| |||| || || |||||||| || |||||| Sbjct 349140 GGTATCAGTACTGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGAT 349199 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 | |||| || || ||||||| |||| | ||||| | || |||||||||||| Sbjct 349200 TCTCAAGGTCGTGTAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATG 349259 Query 212506 GAAGTTATGCA 212516 ||||||||||| Sbjct 349260 GAAGTTATGCA 349270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807278370077440