Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2319 343 2e-89 seq432 181 1e-40 seq1296 134 2e-26 seq219 87.8 2e-12 >seq2319 Length=57875 Score = 343 bits (380), Expect = 2e-89 Identities = 420/570 (74%), Gaps = 6/570 (1%) Strand=Plus/Minus Query 171082 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 171141 |||||| ||| | | || ||| | |||||||| || || ||||||||||| ||||| Sbjct 18565 TGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGG 18506 Query 171142 TATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCA 171201 ||||| ||||| |||||||| ||| | || || || || || || || || || ||||| Sbjct 18505 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 18446 Query 171202 CCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCA 171261 || || || ||| ||||||||| ||| | ||||| || || |||||||| ||||| Sbjct 18445 TCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 18386 Query 171262 CGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTA 171321 |||||| | || || ||| | | ||||| || || || || || || | || | Sbjct 18385 CGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGA 18326 Query 171322 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 171381 || || | ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || Sbjct 18325 AGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTT 18266 Query 171382 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCT 171441 || |||| |||||||| || || ||||||||||||||||| ||||| |||||||| Sbjct 18265 TGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCT 18206 Query 171442 CGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 171501 |||| | |||||||| || | ||||| ||| | | |||||| |||| ||||| || Sbjct 18205 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTACTATGGCTTT 18146 Query 171502 CAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-AC 171560 ||| | || ||||| || || |||||||| || || ||| | | || ||| | Sbjct 18145 CAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGG---TCGTGTAAT 18089 Query 171561 CAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAG 171618 |||| |||| ||| || ||||| | || |||||||| |||||||||||||||||| | Sbjct 18088 TAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACG 18029 Query 171619 AAATGCACACAACTTCCCACTAGACCTAGC 171648 || || || || ||||| ||||||||||| Sbjct 18028 TAACGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq432 Length=331984 Score = 181 bits (200), Expect = 1e-40 Identities = 367/545 (67%), Gaps = 21/545 (4%) Strand=Plus/Plus Query 172020 TTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGA 172079 ||||| || ||||| ||||| ||||| |||||| || || |||| |||||||||||| Sbjct 47499 TTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAATTAGGTGGT 47558 Query 172080 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAG 172139 || |||| ||||| || | || || | || ||| | |||||||| ||| | | || Sbjct 47559 CTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAA 47618 Query 172140 TTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTT 172199 ||||| |||| || |||| | || ||||| || ||| | |||||||| | Sbjct 47619 TTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCCGGTCCA 47678 Query 172200 ATTGCAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTC 172259 ||||| || || | || || || |||||| | |||||| | |||||||||| Sbjct 47679 ATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGGTTCTTT 47738 Query 172260 GCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCAC 172319 |||||| |||||||| ||||| || ||||| | ||| | || | || || || || Sbjct 47739 GCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCAT 47798 Query 172320 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 172379 ||| || | || ||||||||||||||||| || || ||| || | || | || || Sbjct 47799 AATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCCCTA 47858 Query 172380 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATAC 172439 |||| || || ||||| || || ||| | || || || | |||||| Sbjct 47859 TTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGA------------- 47905 Query 172440 ACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAA 172499 || || | | | ||| |||| ||| | || || | || || || | |||||| Sbjct 47906 --TG--GGGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACCCAAGCGGAAGAA 47957 Query 172500 ACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCA 172559 |||||| ||| | || |||||| | || ||||| || || ||||| | || ||||| Sbjct 47958 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 48017 Query 172560 AACAA 172564 || || Sbjct 48018 AATAA 48022 >seq1296 Length=110557 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171118 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCA 171177 ||| || ||||||||||| ||||| ||||| ||||| |||||||| ||| | || || || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 171178 AGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 171237 || || || || || || ||||| || || || ||| ||||||||| ||| | ||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 171238 TGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGAC 171297 || || |||||||| ||||||||||| | || || ||| | | ||||| || || Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 171298 AACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATA 171356 || || || || | || | || || | ||||| ||||| |||||||| | || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq219 Length=535087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 170706 TTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTT-CTAACTGCTGCTGCTTGTTTCATT 170764 |||| ||||||||||| || |||||||| | ||| | || || || || || ||| Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 252224 Query 170765 GTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGT 170824 | || ||||| ||||| ||||| || ||||| || || || | || || ||| | || Sbjct 252223 ATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 252164 Query 170825 TCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATA 170884 ||| | | || || ||||| || || || ||||| | |||| |||| || || Sbjct 252163 TCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATT 252104 Query 170885 GGATTACACTTCTATCCCATCTGGGAAGCAGC 170916 || || ||||| || || || |||||||| || Sbjct 252103 GGTTTGCACTTTTACCCGATATGGGAAGCTGC 252072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570073311855360