Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq520 161 1e-34 seq1210 129 6e-25 seq6 91.5 2e-13 >seq520 Length=294854 Score = 161 bits (178), Expect = 1e-34 Identities = 550/847 (65%), Gaps = 23/847 (3%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | ||| | || || ||||| || || || || | | ||| || | Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 |||||| ||||||| ||||| | | ||| | ||||| |||||| ||||| || Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||||||| || ||||| || |||||||||| ||| || |||| ||||| || | ||| Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT--ATAGAGACGGCTTCAACAATT 21421 |||||| || || |||| || | | ||| || || || ||| || Sbjct 261981 AGCACAAGGAAGCGC--TTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACA 262038 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGAT---ACAATAATTGTTTAAACATCAAACAT 21478 ||| || | | | | |||| | | ||| || | ||| | ||||| Sbjct 262039 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAA-AAGCGAATAA--AGTAAACAA 262095 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 |||||||||||||| | |||||| || | || | || || ||||| |||||||| Sbjct 262096 GCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCA 262155 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAAT 21597 |||||||| || | ||||| | |||||| ||||| || | || || || || || || Sbjct 262156 GGCATTAAACCACGTTTTTTAAGCCAAAAAATTGA-ACAGAAACTACCGGAGAAAAATAT 262214 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 || ||||| |||||| ||||| | || |||| | ||| | | ||| || Sbjct 262215 ACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAATC---GAT 262271 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTT--TAATACAATCAATTGTATCAATAGCTTTT 21715 |||||| ||||| | || |||||| ||||||| ||| || ||||| || | Sbjct 262272 CCATTTCATAGCCCAATCAGC--TTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGA 262329 Query 21716 AAAAGATGAtttttttC-ATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || | | |||| ||||| || | ||| | || ||||||||| Sbjct 262330 AATAAACGATTCTTTTCGATAGA-ATCATTGATATAAGTCTCAATCAAGAGACTATACAT 262388 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||||||||| || ||||| ||||| ||||| || |||||||| | |||||| || Sbjct 262389 TTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGAC 262448 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGGCGG 21893 |||||| || |||| || | |||| || || ||||| || || ||||| Sbjct 262449 TTGAACTTCTTTCATGAATC-TTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGG 262507 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT 21953 |||| || || | | | | || || | |||||| || |||| || ||||| | Sbjct 262508 CAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGT 262567 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 | ||||| ||| | ||| |||||||| | |||||| || ||| || |||| Sbjct 262568 GAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTT 262627 Query 22014 TATACAT 22020 | ||||| Sbjct 262628 TGTACAT 262634 >seq1210 Length=122563 Score = 129 bits (142), Expect = 6e-25 Identities = 545/855 (64%), Gaps = 21/855 (2%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | ||| | || || ||||| || || || || | | || || | Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||| ||||| | | ||| | ||||| |||||| || || | || Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||||| || ||||| || ||||| |||| ||| || |||| |||||| || | || Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT--ATAGAGACGGCTTCA---ACA 21418 |||||| |||| |||| || | | ||| || || || || ||| Sbjct 42948 AGCGCAAGGAAGCGCTTCG--CAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 21419 ATTATATTTATTATCCTAGATGTACTAGGGGGATA---CAATAATTGTTTAAACATCAAA 21475 || | || | | || | ||| | | ||| || | |||| ||||| Sbjct 42890 ATCGTCTTCAC-ACGCTCTTCG--CTAAGTTTCTTTCTCAA-AAGCGAATAAA--TCAAA 42837 Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || |||||||||||||| | ||||| || | || | || || ||||| |||||| Sbjct 42836 CAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAA 42777 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAAAAGAA 21594 || |||||||| || | ||||| | ||| || |||| | || || ||| || || || Sbjct 42776 CCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAGAAACTTCCAGAGAAAAA 42718 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 || || ||||| |||||| ||||| | | |||| | ||| | | ||| Sbjct 42717 TATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATC--- 42661 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 |||||||| ||||| | || || | | |||||||| ||| || ||||| || | Sbjct 42660 GATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATG 42601 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || | | |||| || ||| || ||| | || ||||||||| Sbjct 42600 AAACAAACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACAT 42541 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||||||||| ||||| || || || ||||| |||||||| ||| | |||||||| Sbjct 42540 TTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGAC 42481 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 |||||| || |||| | || | || || || || || || ||||| Sbjct 42480 TTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGC 42421 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 ||| || || | | | | ||||| | |||||| || |||| || ||||| | Sbjct 42420 AAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTG 42361 Query 21955 TAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 | ||||| |||||||| |||||||| | ||||| || ||| || ||||| Sbjct 42360 ATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTT 42301 Query 22015 ATACATAATCCAGAT 22029 ||||| |||||| Sbjct 42300 GTACATTTCCCAGAT 42286 >seq6 Length=1263909 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||||||| || | ||| ||||| ||| |||| |||||| || ||||| | | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATAT 21570 || |||||||||||||||||||| | ||| ||||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATAT 1160446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531718464405760