Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq520 300 2e-76 seq1210 269 3e-67 seq6 86.0 8e-12 >seq520 Length=294854 Score = 300 bits (332), Expect = 2e-76 Identities = 594/872 (68%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || ||||| || || || || || ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 |||||| ||||||| ||||| |||||||||||||||| | | || | |||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 33189 |||||||| || || || || |||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 33190 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 || || ||||| || || || ||||||| ||||| |||||||| | | Sbjct 261981 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACA 262038 Query 33250 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 |||| | | || |||||||| || | ||| | | | | ||||| || Sbjct 262039 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCA 262098 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| || || ||||| ||||| | ||| || ||||| ||||| || | || ||| Sbjct 262099 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 262158 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| ||||| |||||||||||||| || ||| ||| || || || || || ||| Sbjct 262159 ATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCT 262218 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTT 33488 || || |||||| |||| | ||| || || | | | || || ||||| || Sbjct 262219 TCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATTT 262277 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||||||| || ||||| | |||||| ||||| || || |||| ||| | | Sbjct 262278 CATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACG 262337 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 || ||||| || ||| || | |||||| || ||||| |||||||||||||| ||||| Sbjct 262338 ATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATG 262397 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 |||||||||||| || ||||| || ||||| || | ||||| | | || ||||| Sbjct 262398 AATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTC 262457 Query 33669 TGTACAAAATCGTTCCGCCAA-ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | | |||| ||||| ||| ||| || ||||| ||||| ||| ||||| || | Sbjct 262458 TTTCATGAATC-TTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAG 262516 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33787 | | || ||| || || | |||| | ||||| || ||||| | | | || Sbjct 262517 CAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGAT 262576 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 ||| || | ||| |||||||| ||||||| ||||| || || || ||||| ||||| | Sbjct 262577 CTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTT 262636 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATA 33879 ||| || | | ||||| || ||||| ||| Sbjct 262637 CCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 269 bits (298), Expect = 3e-67 Identities = 590/875 (67%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||| ||||| ||||||||||||||| | | || | ||| | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 33189 ||||||||| || || || || ||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 33190 AGTTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTA 33247 || || ||||| || |||| || ||||||| || || || ||||| | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCA--AACAAATTCTCTCTCGATCTCAACAGCATCGCGCA 42893 Query 33248 TAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATG 33307 ||| | | || ||||| || || | ||| | | | |||||||| | Sbjct 42892 CAATCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAG 42833 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 | ||||| || || || || ||||| | ||| || ||||| ||||| || | || | Sbjct 42832 CAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAG 42773 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||||| ||||| ||||||||||| || || | | ||| |||||| || || || | Sbjct 42772 GCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATAC 42713 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCAC 33486 |||| || |||||| |||| | || || || | | | || || ||||| Sbjct 42712 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCAT 42654 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 || ||||||||| || |||||| | | |||||| |||||||| || |||| ||| | | Sbjct 42653 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAA 42594 Query 33547 TAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 || || ||| ||| ||| || | |||||| || ||||| |||||||||||||| | Sbjct 42593 CGATTCTTCTCA--ACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAG 42536 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 ||||||| || || || || ||||| |||||||||||| | ||||| | | || | Sbjct 42535 AATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAA 42476 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 ||||| | |||| | | || | ||| || || || ||||| || ||||| | Sbjct 42475 CTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGA 42416 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | || | || ||| ||||| | |||| | ||||| || ||||| | || | Sbjct 42415 AGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAA 42356 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 ||||| |||| ||| |||||||| | ||||| || || || || || ||||| |||| Sbjct 42355 GATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACA 42296 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | | |||||| | | ||||| |||||||| ||| Sbjct 42295 TTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq6 Length=1263909 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || ||||| ||||| |||||||| |||||| |||||||| || || || || || Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400 || ||||||| || | |||||||||||| ||||||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGG 1160448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622733653699840