Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq23 125 7e-24 seq1436 100 3e-16 seq933 84.2 2e-11 >seq23 Length=202804 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| |||| || ||| | || ||| | || ||||||| | Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| || ||| ||||| ||||| || || || |||||| Sbjct 5320 GACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAA 5379 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || ||| |||||||||||||||| | | | ||| || ||| Sbjct 5380 CAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAAC 5439 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| || ||||||| || || Sbjct 5440 ATCCAAAAAGAATCCACGCTCCATCTCGTTCT 5471 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| |||| |||||| | ||||| ||||| | |||||| Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || |||||| || || |||||||| || || ||||| Sbjct 5548 GACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCAG 5607 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | | || ||||| || || |||| || | | || ||||| Sbjct 5608 CAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAAT 5667 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||| ||||||||||| | ||||| || || ||||| Sbjct 5668 ATTCAGAAAGAATCTACACTTCATCTTGTTCTTAGACT 5705 >seq1436 Length=88924 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| || | | |||| | || ||| | || ||||||| | Sbjct 39218 ATGCAGATCTTCGTGAAAACCCTACCGGCAAAACC-ATAACCCTAGAGGTAGAATCCTCC 39160 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| || || ||||| ||||| || || || || ||| Sbjct 39159 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGACCAA 39100 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| |||||||||||||| | ||| | ||| || ||| Sbjct 39099 CAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAAC 39040 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| || |||| || ||||| Sbjct 39039 ATCCAAAAAGAATCCACACTCCACCTCGTCCT 39008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| |||| || ||| | || ||| | || ||||||| Sbjct 7492 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCT 7433 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| || || ||||| ||||| || || || || || Sbjct 7432 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCAG 7373 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| |||||||| ||||| | | | | ||| || ||| Sbjct 7372 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAAC 7313 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||||||||| || ||||||| || || Sbjct 7312 ATCCAAAAAGAATCCACACTCCATCTCGTTCT 7281 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| ||||||||||| | ||||| ||||| | ||||| Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || |||||| || |||||||| || ||||| ||||| Sbjct 7204 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAG 7145 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | || || ||| | ||||||| |||| | || ||||| Sbjct 7144 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 7085 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 || || ||||| ||||| | ||| |||| || || Sbjct 7084 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAG 7050 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| ||||||||||| | ||||| ||||| | ||||| | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || |||||| || |||||||| || ||||| ||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | || || ||| | ||||||| |||| | || ||||| Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 26949 ATTCAAAAAGAATCTAC 26965 || || ||||| || || Sbjct 38811 ATCCAGAAAGAGTCCAC 38795 >seq933 Length=173040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCA 26825 ||||||| | ||||| || || || || ||||| | ||||| | || | ||| | Sbjct 29696 AATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTTGAGAGTTC 29755 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || || || | || ||| |||||| || || ||||| || ||||||||| Sbjct 29756 A--GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCCGAT 29813 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA-GAAACGTCAGC-GACT 26943 || || || || || | | || || ||||| ||||||| || || || | || || | Sbjct 29814 CAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTT--GCTGATT 29871 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| ||||| ||||| ||| ||||| |||| || | ||| | || || Sbjct 29872 ATAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGG 29923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478498314529280