Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq92 87.8 5e-12 >seq92 Length=773687 Score = 87.8 bits (96), Expect = 5e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| || | ||| || || ||| | |||||| | ||| Sbjct 23634 ATGAAAGAGGATAGTATTGAGGGGATTTATGATACTCTGAAGGAGTGTGCTGTCATTAGT 23693 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || ||| || ||||||||||| || | || || | ||||| | |||||||||| Sbjct 23694 AAATCTGCTGGAGGAATTGGTGTTTCTGTTCATAACATACGTGCCTATGGCAGTTACATT 23753 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| || || ||||| | ||||| ||| | |||||||| | | ||| Sbjct 23754 CGTGGAACAAATGGGACTTCTAATGGTATTGTTCCAATGTTGCGTGTGTTCAATGACACT 23813 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || ||||| ||||| ||| | ||||| Sbjct 23814 GCCCGTTATGTTGATCAGGGGGGAGGCAAGAGGAAAGG 23851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302895640645568