Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1436 120 3e-22 seq1039 102 7e-17 seq1642 98.7 8e-16 seq322 98.7 8e-16 seq933 93.3 4e-14 seq23 84.2 2e-11 seq1740 82.4 6e-11 >seq1436 Length=88924 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| || || ||||||||||| || ||||| || ||| | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || || ||| ||||||||||| |||| |||||| Sbjct 38931 GACACAATCG-ACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCA 38873 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || ||||| ||||||| | ||| | || |||||||| Sbjct 38872 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 38813 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || |||||||| || | ||| | ||| | | ||||| ||||| Sbjct 38812 TATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || |||||||| || || ||||||||||| || ||||| || ||| Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || || ||| ||||||||||| | || |||||| Sbjct 7204 GACACAATCG-ACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCA 7146 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || ||||| ||||||| | ||| | || |||||||| Sbjct 7145 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 7086 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| | ||| |||| | || ||||| || |||| Sbjct 7085 TATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGGAA 7036 >seq1039 Length=240209 Score = 102 bits (112), Expect = 7e-17 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 ||||| || ||||| || || ||||| ||||| ||||| ||| | || | |||| | Sbjct 129302 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTAGAGAGTTCT 129243 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | |||| | | |||| || || || || ||||||||||| | ||| ||| Sbjct 129242 G--ACACCATAG-ACAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCAGAT 129186 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || | |||| |||||| ||||| | ||||||| || |||| |||| |||||| Sbjct 129185 CAGCAGAGGTTGATTTTTGCGGGAAAACAGCTCGAAGATGGCAGAACCCTGGCTGATTAT 129126 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| || |||||||| ||| | || | |||||| Sbjct 129125 AACATCCAGAAAGAGTCAACTCTTCACCTTGTGTTG 129090 >seq1642 Length=65368 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| ||||| ||||| ||| | || |||| Sbjct 54162 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 54221 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || || ||| ||||||||||| | ||| ||||| Sbjct 54222 GACACCATAG-ACAATGTCAAGGCCAAGATTCAAGATAAAGAAGGTATTCCCCCAGATCA 54280 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || || || | ||||||| || |||| |||| |||||||| Sbjct 54281 GCAGAGGTTAATTTTTGCAGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAA 54340 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || ||||||||||| Sbjct 54341 CATCCAGAAAGAGTCTAC 54358 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || || || || || || |||||| | || ||| | Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| ||||| || || || |||||||| ||||| || || Sbjct 33827 GACACTATTG-ACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCA 33885 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | |||| ||| || || || | ||||||| | || |||| |||||||| Sbjct 33886 GCAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAA 33945 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| |||||||| || Sbjct 33946 CATTCAGAAAGAGTCCAC 33963 >seq322 Length=397916 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || || || ||||| ||||| || | || ||| | Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| || ||||| || ||| ||||||| |||||||| || | || | || || Sbjct 333349 GATACTATT-GACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCA 333291 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| ||||| || || ||||||| || |||| |||||||| Sbjct 333290 GCAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAA 333231 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 || || || || |||||| | || |||| ||||| Sbjct 333230 TATCCAGAAGGAATCTACTCTCCACCTGGTTTTGAG 333195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGA--AACGGAGTCC 115342 ||||||||||||||| || || | || |||||||| ||||| | || |||| | Sbjct 312302 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 312243 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | || ||| | | | || ||| || ||| |||||||| || |||| ||| Sbjct 312242 A--GATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGAT 312185 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || ||||| | ||| || ||||| | || |||| | |||| | || ||||| Sbjct 312184 CAGCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTAC 312125 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| || || || ||||| | ||| |||| | |||||| |||| |||| Sbjct 312124 AACATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGAA 312073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || | || ||||||||||| ||| | || || ||| | Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || || || ||||| ||| |||| ||||||| Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| || || ||| | || |||| | |||| | || ||||| ||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || || || ||||| | ||| ||||| | |||||| |||| |||| Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 312529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | | ||| |||||||| ||| | || ||||| Sbjct 334094 ATGCAAATTTTCGTGAAAACATTGATGGGTAAAACCATCACCCTTGAGGCGGAGAGTTCT 334035 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || ||| || || || || ||||| | || |||||| Sbjct 334034 GATACCATAG-ACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCA 333976 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | || || |||||||||||||||| | ||| | || ||||| || Sbjct 333975 GCAAAGGCTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCAGATTACAA 333916 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||| ||||| || | || | |||||| | || |||| || Sbjct 333915 CATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGCGGTTAAGAGGTGG 333868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCC 115342 ||||||||||||||| || || | || |||||||| ||||| | || ||| | | Sbjct 312074 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTC 312015 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || | ||| ||| | || ||| || ||| ||||| || || |||| ||| Sbjct 312014 AG--ATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGAT 311957 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || ||||| | ||| || || ||| | || |||| | |||| | || |||||| Sbjct 311956 CAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTAT 311897 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| ||||| || || ||| | ||| |||| ||| Sbjct 311896 AACATCCAAAAGGAATCCACTCTCCATTTGGTTTTG 311861 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATT-ACCGTCGAAACGGAG--TC 115341 |||||| ||||||||||| || | || ||||| || ||| || | || ||| | Sbjct 333639 AATGCAGATTTTTGTCAAGACTTTAACAGGAAAGACTATTTACTTTAGAGGTTGAGAGTT 333580 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||| | ||| | | | || ||| || ||| ||||| || || ||||| || Sbjct 333579 CAG--ATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGA 333522 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| || ||||| | ||| || |||||| | || |||| | |||| | || ||||| Sbjct 333521 TCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTTGCTGATTA 333462 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||| ||||| || || ||| | ||| |||| ||| Sbjct 333461 TAACATCCAAAAGGAATCCACTCTCCATTTGGTTTTG 333425 >seq933 Length=173040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || | || ||||||||||| ||| | || || ||| | Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || || || || || ||||| ||| |||| ||||||| Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| || || ||| | || |||| | |||| | || ||||| ||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || || || ||||| | ||| ||||| | |||||| |||| |||| Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 29469 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCC 115342 ||||||||||||||| || || | || ||||| || || || | || ||| | | Sbjct 29696 AATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTTGAGAGTTC 29755 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || | ||| ||| | || ||| || ||| ||||| ||||| |||| ||| Sbjct 29756 AG--ATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCCGAT 29813 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || ||||| | ||| || || ||| | ||||||| | || | || |||||| Sbjct 29814 CAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTAT 29873 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| ||||| || || ||| | ||| |||| ||| Sbjct 29874 AACATCCAAAAGGAATCCACTCTCCATTTGGTTTTG 29909 >seq23 Length=202804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || |||||||| || || ||||||||||| || ||||| || || Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || || ||| ||||| ||||| | || |||||| Sbjct 5548 GACAC-AATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCA 5606 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| || | || | ||| || ||||| | || |||| | || | || |||||||| Sbjct 5607 GCAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAA 5666 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||| ||||| ||||| Sbjct 5667 TATTCAGAAAGAATCTAC 5684 >seq1740 Length=56962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || || || ||||| || |||||| | || ||| | Sbjct 42541 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 42482 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || || || |||||||| ||||| || || Sbjct 42481 GACACTATTG-ACAATGTGAAGACCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCA 42423 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || || || | ||||||| | || |||| |||||||| Sbjct 42422 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAA 42363 Query 115465 CATTCAAAAAGAGT 115478 |||||| ||||||| Sbjct 42362 CATTCAGAAAGAGT 42349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425201837274880