Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1436 118 1e-21 seq1740 116 3e-21 seq933 113 4e-20 seq322 113 4e-20 seq1039 104 2e-17 seq23 102 8e-17 seq37 95.1 1e-14 seq1642 89.7 5e-13 >seq1436 Length=88924 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | ||| | || || || ||||| |||||||||||| Sbjct 7265 GCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 7324 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||| || || || || || ||| |||| | |||||||||||| || || Sbjct 7325 AAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 7384 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| |||||| |||| | || | || || | ||| || | Sbjct 7385 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATTCTAC 7444 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | |||||| |||||||| ||||| || || |||||||||| Sbjct 7445 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCATGA 7494 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| || ||||||||||| | || ||||| || || || || ||||| | | Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATC-CGC 38823 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | || || | ||||| ||||| |||| || |||||||| || ||||| Sbjct 38824 AAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 38883 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||| || || ||| ||| | | || | || |||| ||| || | Sbjct 38884 GATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 38943 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||| || ||||| ||||| || || || |||||| Sbjct 38944 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCATG 38992 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | || || || ||||| |||||||||||| Sbjct 38992 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 39051 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || || || || || ||| |||| | |||||| ||||| || || Sbjct 39052 AAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGG 39111 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| |||||| |||| | || | || |||| ||| || | Sbjct 39112 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTAC 39171 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | |||||| |||| ||| ||||| ||||| |||||||||| Sbjct 39172 CTCTAGGGTTATGGTTTTGCCGG-TAGGGTTTTCACGAAGATCTGCATGA 39220 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| | || || ||||| | || ||||| || || || || ||||| | | Sbjct 7038 CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATC-CGC 7096 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | || || | ||||| ||||| |||| || |||||||| || ||||| Sbjct 7097 AAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 7156 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||||| || || ||| ||| | | || | || || | ||| || | Sbjct 7157 AATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAAC 7216 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||| || ||||| ||||| ||||| || |||||| Sbjct 7217 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCATG 7265 >seq1740 Length=56962 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| ||||| | ||| ||||||||||| ||||||||||| Sbjct 21663 CCACCGCGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 21604 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| ||||| | |||||| || || | || | |||||||||||| || ||| Sbjct 21603 AGGGTACGCCCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 21544 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | |||| | | | || | ||||| | ||| | Sbjct 21543 ATCCCTTCCTTATC-TTGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCAAC 21485 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||||||||| || || || || || || || ||||| Sbjct 21484 TTCGAGAGTAATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | || | ||| |||| || |||||||| ||||| | Sbjct 42315 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGAACTCTTTCTGAATGTTATAATCAGCC 42374 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || | || || | |||||||| || ||| Sbjct 42375 AAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGG 42434 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || || ||| | | || | ||| || | | ||| | Sbjct 42435 ATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTACC 42494 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || ||||| ||||| || |||||||||||||| Sbjct 42495 TCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 42541 >seq933 Length=173040 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | ||||| ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 29467 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT 29408 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| || ||||| ||||| |||| | | |||||| || ||||| Sbjct 29407 -AGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGG 29349 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || |||||||| ||| || ||||| | || | ||||||| ||| || | Sbjct 29348 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAAC 29289 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || | || || ||||| ||||||||| Sbjct 29288 CTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCATG 29240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | ||||| ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 29695 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT 29636 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| || ||||| ||||| |||| | | |||||| || ||||| Sbjct 29635 -AGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGGGAGG 29577 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||| || || ||| | | || || | | || | |||||| | ||| | Sbjct 29576 GATACCTTCCTTATC-CTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCAA 29518 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || |||| ||| || || ||||||||||| Sbjct 29517 CCTCTAAAGTAATAGTCTTCCCTGTTAAAGTCTTCACAAAAATCTGCAT 29469 >seq322 Length=397916 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | ||||| ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 312531 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT 312590 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| || ||||| ||||| |||| | | |||||| || ||||| Sbjct 312591 -AGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGG 312649 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || |||||||| ||| || ||||| | || | ||||||| ||| || | Sbjct 312650 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAAC 312709 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || | || || ||||| ||||||||| Sbjct 312710 CTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCATG 312758 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | || || ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 333640 CCACCTCTCAATCTAAGAACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT 333699 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| || ||||| ||||| |||| | | |||||| || ||||| Sbjct 333700 -AGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCACTGCTGATCAGGAGG 333758 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || |||||||| ||| || ||||| | || | ||||| | ||| || | Sbjct 333759 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCTGAGGATTCAAC 333818 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||| || || | || || ||||| |||||||| Sbjct 333819 CTCAAGGGTGATAATTTTGCCAGTCAAGGTCTTAACGAATATCTGCAT 333866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | ||||| ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 312303 CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTGCT 312362 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| || || || ||||| |||| | | |||||| || ||||| Sbjct 312363 -AGGGTTCTTCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGG 312421 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||| || || ||| | | || || | | || | |||||| | ||| | Sbjct 312422 GATTCCTTCCTTATC-CTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAA 312480 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || |||| ||| || || ||||||||||| Sbjct 312481 CCTCTAAAGTAATAGTCTTTCCTGTTAAAGTCTTCACAAAAATCTGCAT 312529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 131017 AAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGC 131076 || |||||||| | || | ||| ||||||||||| ||||||||||| | |||||| Sbjct 312768 AACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGG 312827 Query 131077 GAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCT 131136 || |||| || || || || |||| | | ||||| || || || || ||||| Sbjct 312828 CCATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGGAATCCCTTCC 312887 Query 131137 TTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 ||||| ||| || |||| | | | || | ||||| | ||| | || | ||| Sbjct 312888 TTGTCTTGGATCTT-AGCTTTAACATTGTCTATGGTATCAGAAATCTCCACCTCAAGGGT 312946 Query 131196 AACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | |||||||||||| | ||||| |||||||| ||||| Sbjct 312947 GATGGTTTTACCGGTCAATGTTTTCACGAAAATTTGCAT 312985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | ||| | || || ||||| | ||| || ||||| || ||||||||||| ||| Sbjct 312075 CCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAGCT 312134 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| ||||| || ||||| |||| | | |||||| || ||||| Sbjct 312135 -AGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGG 312193 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||| ||||| || ||| | | || || | | || | |||||| | ||| | Sbjct 312194 GATTCCCTCTTTATC-CTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAA 312252 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || | ||| || || ||||| ||||| Sbjct 312253 CCTCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312301 >seq1039 Length=240209 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | || ||||||||||| || |||||||| Sbjct 129304 CCACCACGGAGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCA 129363 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| |||||| |||||||| || || | || | |||||||||||| || ||| Sbjct 129364 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 129423 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||| | | || | ||||| | ||| | Sbjct 129424 ATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACT 129483 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| || || || ||||| || ||||| Sbjct 129484 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 129530 >seq23 Length=202804 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| || || | ||| | || || || ||||| |||||||||||| Sbjct 5487 GCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGGC 5428 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || || || || || || ||| |||| | ||| || || || || || Sbjct 5427 AAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGG 5368 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||| ||||| ||| ||| || |||| | || | || |||| ||| || | Sbjct 5367 AATTCCTTCCTTGTC-TTGAATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTA 5309 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| |||||||| ||||| ||||| || |||||| Sbjct 5308 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCATG 5259 >seq37 Length=1182629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | ||| | || |||||||| || ||||||||||| Sbjct 292903 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGCA 292962 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || | |||||| || ||| |||| | ||| ||||| |||||||| Sbjct 292963 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGGA 293022 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || |||| | || | || || | | || | Sbjct 293023 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACC 293082 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| |||||||| ||||| || ||||| Sbjct 293083 TCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| ||||| ||||| || Sbjct 291713 CCACCACGGAGACGGAGAACAAGGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGCA 291772 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | ||||| | |||||| ||||| |||| || | |||||| || | ||| Sbjct 291773 AGGGTCCTTCCATCCTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGATCAGTGGGG 291832 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||||| ||| | | || | ||||| | | ||| | Sbjct 291833 ATACCTTCCTTATCCTGAATTTTGGCCTTCACATTATCAATGGTATCAGAGCTCTCCACC 291892 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || | ||| || || ||||||||||| Sbjct 291893 TCCAAGGTAATGGTCTTACCAGTCAAAGTCTTAACAAAAATCTGCAT 291939 >seq1642 Length=65368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | || | ||| ||||| || |||||||| ||||| | Sbjct 33993 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTATAATCAGCC 33934 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || | || || | |||||||| || ||| Sbjct 33933 AAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGGTCTGGGGGG 33874 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || || ||| | | || | ||| || | | ||| | Sbjct 33873 ATACCTTCTTTGTCCTGTATCTTGGCCTTTACATTGTCAATAGTGTCTGAGCTCTCTACC 33814 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || ||||| ||||| || |||||||||||||| Sbjct 33813 TCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCACGAAAATCTGCAT 33767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| ||||| | ||| ||||| || |||||||||||||| ||| Sbjct 54160 CCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCT 54101 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||| || || || |||| | | ||| ||||| || || Sbjct 54100 -AAAGTCCGACCATCCTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGG 54042 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| || || ||| | | || | ||||| | ||| | Sbjct 54041 AATGCCTTCTTTGTCCTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAAC 53982 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || ||||| || ||||| Sbjct 53981 TTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 53934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471850994012160