Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1740 98.7 8e-16 seq1436 96.9 3e-15 >seq1740 Length=56962 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || |||||||| ||||||| |||| | | || Sbjct 43014 AGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCT 43073 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || ||| |||| |||| ||| ||||| ||| | ||||| ||||| Sbjct 43074 TCCAACTGTTTTCCGGCAAAAATGAGCCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCT 43133 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||| | ||| |||| || || ||| Sbjct 43134 TGAATCTTAGCCTTTACATTGTCAATTGTGTCTGAGCTCTCAACCTCCAAAGTAATTGTT 43193 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || |||||||||||||| Sbjct 43194 TTGCCTGTAAGGGTCTTCACAAAAATCTGCAT 43225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || |||||||| || |||| ||| | | || Sbjct 22104 AGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTCCGGCCATCT 22045 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || ||| |||| | || ||||| || || | ||||| ||||| Sbjct 22044 TCCAACTGTTTCCCGGCAAAAATCAACCTTTGTTGATCTGGGGGAATACCCTCCTTGTCC 21985 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | | |||||| | ||| |||| || || || Sbjct 21984 TGAATCTTAGCCTTCACATTGTCAATAGTGTCTGAGCTCTCAACCTCCAAAGTTATTGTC 21925 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || || || |||||||||||||| Sbjct 21924 TTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 21893 >seq1436 Length=88924 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || | || || || | ||| ||||||||||| || || || || || || || Sbjct 38764 CCCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGC 38823 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | || |||||||| || || ||| | || | ||||| || || ||| Sbjct 38824 AAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 38883 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || ||||| || ||| | | |||||| | | | | |||||| || || Sbjct 38884 GATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 38943 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||||| || || ||||||||||| || ||||| Sbjct 38944 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || | ||| || |||| ||| ||||| ||||| || || || || || || || Sbjct 7038 CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATCCGCA 7097 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||||||| || || ||| | || | ||||| || || ||| Sbjct 7098 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGA 7157 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | | |||||| | | | | ||||| || || | Sbjct 7158 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAACT 7217 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||||| || || |||||||| || || ||||| Sbjct 7218 TCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 7264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404952607437760