Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1431 131 1e-25 seq933 122 6e-23 seq322 122 6e-23 seq1642 111 1e-19 seq1740 107 1e-18 seq1039 107 1e-18 seq1852 105 4e-18 seq1357 102 5e-17 seq276 96.9 2e-15 seq255 96.9 2e-15 seq78 96.9 2e-15 seq37 95.1 8e-15 seq426 93.3 3e-14 seq23 86.0 4e-12 seq1436 84.2 1e-11 >seq1431 Length=89469 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 89133 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 89192 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 89193 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 89227 Score = 123 bits (136), Expect = 2e-23 Identities = 85/95 (89%), Gaps = 6/95 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| ||||||||| |||| || |||||||| Sbjct 61270 AAGCCCGTTCCCTTGGCTGTG-TTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 61212 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 61211 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 61177 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 81434 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 81493 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 81494 GCCAATATTTAGCCTT 81509 Score = 104 bits (114), Expect = 2e-17 Identities = 74/84 (88%), Gaps = 6/84 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| ||||||||| |||| || |||||||| Sbjct 60068 AAGCCCGTTCCCTTGGCTGTG-TTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 60126 Query 25957 TAATCCTTTCATGCGCGTCACTAA 25980 |||||| ||||||||||||||||| Sbjct 60127 TAATCCATTCATGCGCGTCACTAA 60150 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||| | | Sbjct 27419 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCGCTC 27478 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 27479 GACAATATTTAGCCTT 27494 Score = 91.5 bits (100), Expect = 1e-13 Identities = 64/73 (88%), Gaps = 5/73 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 57993 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 58052 Query 25957 TAATCCTTTCATG 25969 |||||| |||||| Sbjct 58053 TAATCCATTCATG 58065 >seq933 Length=173040 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | | |||||||||||| || ||||| || || ||||||| Sbjct 29699 CATT-CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAAT 29641 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | | | | || || | ||| || || ||||| || || | || ||||||| Sbjct 29640 CAGCTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGG 29581 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || ||| ||| || |||||||| | | ||||||| ||| | Sbjct 29580 GAGGGATACCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCT 29521 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| |||||||| || || || || || ||||| || |||||||| Sbjct 29520 CAACCTCTAAAGTAATAGTCTTCCCTGTTAAAGTCTTCACAAAAATCTGCAT 29469 Score = 105 bits (116), Expect = 4e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | | |||||||||||| || ||||| || || ||||||| Sbjct 29471 CATT-CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAAT 29413 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | | | | || || | ||| || || ||||| || || | || ||||| | Sbjct 29412 CAGCTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAG 29353 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||| ||||||||| || || ||| ||||| | | ||||| || Sbjct 29352 GAGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATT 29293 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || | || || ||||| || |||||||| || ||||||||||||||| Sbjct 29292 CAACCTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCATG 29240 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || || |||||||||||||| | |||| ||| | || || || || || |||||||| Sbjct 30343 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTACCGGCAAAA 30284 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || | || || || | ||| | || || || || ||| ||| |||||||| Sbjct 30283 ATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGAATCTTTGCTTTCACATTA 30224 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||||| ||||| || || || |||||||| || || || | ||| ||||| Sbjct 30223 TCGATTGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCAGTAAGGGTCTTCACA 30164 Query 38307 AATATCTGCATG 38318 ||||| |||||| Sbjct 30163 AATATTTGCATG 30152 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || || |||| ||| | ||||| ||| ||||||||| || |||||||| | Sbjct 29239 CCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCA 29180 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || |||||||| || ||||| || || | ||| ||||| | || Sbjct 29179 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGA 29120 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| || || || || || | | ||||| ||| || || Sbjct 29119 ATCCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCACC 29060 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| || ||||| ||||||||||| || ||||| Sbjct 29059 TCAAGGGTGATGGTTTTGCCAGTCAATGTTTTCACGAAAATTTGCAT 29013 >seq322 Length=397916 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | | |||||||||||| || ||||| || || ||||||| Sbjct 312299 CATT-CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAAT 312357 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | | | | || || | |||||| || ||||| || || | || ||||| | Sbjct 312358 CTGCTAGGGTTCTTCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTG 312417 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || ||| ||| || |||||||| | || ||||||| ||| | Sbjct 312418 GAGGGATTCCTTCCTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCT 312477 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| |||||||| || || || || || ||||| || |||||||| Sbjct 312478 CAACCTCTAAAGTAATAGTCTTTCCTGTTAAAGTCTTCACAAAAATCTGCAT 312529 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | | ||||||||||| || ||||| || || ||||||| Sbjct 312071 CATT-CCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAAT 312129 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | | | | || || | ||||| || ||||| || || | || ||||| | Sbjct 312130 CAGCTAGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTG 312189 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || ||||| ||| ||| || |||||||| | || ||||||| ||| | Sbjct 312190 GAGGGATTCCCTCTTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCT 312249 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||||||||| || ||||| || || || || || ||||| Sbjct 312250 CAACCTCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312301 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| |||||||| |||||| |||||||| || || ||||||| Sbjct 311845 TACCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAG 311904 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || || | ||| || || ||||| || || | || ||||| | | Sbjct 311905 CAAGGGTTCTTCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGAG 311964 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| || |||||||| | | ||||||| ||| |||| Sbjct 311965 GGATACCCTCCTTATCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAA 312024 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| ||||||||||| || ||||| || || || || || ||||| Sbjct 312025 CCTCTAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312073 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || |||||||| | ||||| ||| ||||||||| || |||||||| | Sbjct 333866 TACCACCTCTTAACCGCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTG 333925 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || ||||||||||| ||||| || || || | ||| ||||| | | Sbjct 333926 CAAGGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTG 333985 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || || || || | | ||||| ||| || Sbjct 333986 GAATCCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCG 334045 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||||||| |||| ||||||||||| || ||||| Sbjct 334046 CCTCAAGGGTGATGGTTTTACCCATCAATGTTTTCACGAAAATTTGCAT 334094 Score = 105 bits (116), Expect = 4e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | | |||||||||||| || ||||| || || ||||||| Sbjct 312527 CATT-CCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAAT 312585 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | | | | || || | ||| || || ||||| || || | || ||||| | Sbjct 312586 CAGCTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAG 312645 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||| ||||||||| || || ||| ||||| | | ||||| || Sbjct 312646 GAGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATT 312705 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || | || || ||||| || |||||||| || ||||||||||||||| Sbjct 312706 CAACCTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCATG 312758 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | | ||||||||||| || ||||| || || ||||||| Sbjct 333636 CATT-CCACCTCTCAATCTAAGAACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAAT 333694 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | | | | || || | ||| || || ||||| || || | || ||||| | Sbjct 333695 CAGCTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCACTGCTGATCAG 333754 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||| ||||||||| || || ||| ||||| | | |||||| || Sbjct 333755 GAGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCTGAGGATT 333814 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || ||| |||| || |||||||| || |||||||||||||| Sbjct 333815 CAACCTCAAGGGTGATAATTTTGCCAGTCAAGGTCTTAACGAATATCTGCAT 333866 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || || |||| ||| | ||||| ||| ||||||||| || |||||||| | Sbjct 312759 CCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGCA 312818 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || ||||||||||| |||||||| || || | ||| ||||| | || Sbjct 312819 AGGGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGGA 312878 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| || || || ||||| | | ||||| | | || || Sbjct 312879 ATCCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCTATGGTATCAGAAATCTCCACC 312938 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || |||||||| ||||| ||||||||||| || ||||| Sbjct 312939 TCAAGGGTGATGGTTTTACCGGTCAATGTTTTCACGAAAATTTGCAT 312985 >seq1642 Length=65368 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| || || ||| || ||||| |||||||||| Sbjct 54162 TACCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAG 54103 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | |||||||| ||||| || || | ||||| || | | Sbjct 54102 CTAAAGTCCGACCATCCTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTG 54043 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||| || ||| ||||| | | |||||| ||| |||| Sbjct 54042 GAATGCCTTCTTTGTCCTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAA 53983 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||| || ||||| || ||||| Sbjct 53982 CTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 53934 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| ||| | || | ||||| ||| ||| || ||||| || ||||||| Sbjct 33995 TACCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTATAATCAG 33936 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | || ||||| ||||| || | | ||| || || | || Sbjct 33935 CCAAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGGTCTGGGG 33876 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||| ||||| | | ||| ||| || || | Sbjct 33875 GGATACCTTCTTTGTCCTGTATCTTGGCCTTTACATTGTCAATAGTGTCTGAGCTCTCTA 33816 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || |||||||| || || || | || |||||||| |||||||| Sbjct 33815 CCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCACGAAAATCTGCAT 33767 >seq1740 Length=56962 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| ||| | || | ||||| ||| ||| || ||||| || ||||||| Sbjct 42313 TACCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGAACTCTTTCTGAATGTTATAATCAG 42372 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | || ||||| ||||| || | | ||| || || | || Sbjct 42373 CCAAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGG 42432 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||||||||| | | ||| ||| || || | Sbjct 42433 GGATACCTTCTTTGTCCTGTATCTTGGTCTTCACATTGTCAATAGTGTCTGAGCTCTCTA 42492 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || |||||||| || || || | || |||||||| |||||||| Sbjct 42493 CCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 42541 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||||||| | || | |||||| ||| ||||| || || |||||||| | Sbjct 42997 TACCGCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGG 43056 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || || |||||||||||||| || || | || || || | | Sbjct 43057 CCAAGGTTCGGCCATCTTCCAACTGTTTTCCGGCAAAAATGAGCCTCTGCTGGTCTGGAG 43116 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || ||||| ||| || ||| ||||| | | || ||| || |||| Sbjct 43117 GGATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTGTCAATTGTGTCTGAGCTCTCAA 43176 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| ||||| || || | ||| ||||| || |||||||| Sbjct 43177 CCTCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTCACAAAAATCTGCAT 43225 >seq1039 Length=240209 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||||||| | |||| |||||| ||| ||||| || || |||||||||| Sbjct 128846 TACCTCCCCTCAAACGAAGGACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAG 128905 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || ||||| ||||| || | | ||| ||||| | || Sbjct 128906 CCAAGGTACGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGG 128965 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| || || ||||||||| | | || ||| || |||| Sbjct 128966 GAATTCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAA 129025 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || ||||| || | ||||||||||| |||||||| Sbjct 129026 CCTCCAAAGTTATTGTCTTACCGGTAAGAGTTTTCACGAAAATCTGCAT 129074 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||||||| || ||| ||||||||| ||||||||||||| Sbjct 129302 TACCACCACGGAGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAG 129361 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| || | || ||||| ||||| || || || || || || | | Sbjct 129362 CAAGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTG 129421 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| || ||| ||||| | | |||||| ||| |||| Sbjct 129422 GGATCCCTTCCTTATCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAA 129481 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||| || ||||| || ||||| Sbjct 129482 CTTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 129530 >seq1852 Length=45573 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 44388 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 44447 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 44448 GCCAATATTTAGCCTT 44463 >seq1357 Length=101230 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 44140 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 44199 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||| || Sbjct 44200 GCCAATATTTAGCTTT 44215 >seq276 Length=436033 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||||| || |||||||| || | | | || |||| || | ||| Sbjct 192457 TGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGT 192398 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || || ||||||||||| | || | ||||| ||||| ||||| Sbjct 192397 TTTCCGGCGAAGATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTG 192338 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | || ||||| | |||||| || | || || || |||||||| Sbjct 192337 GCCTTGACGTTGTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTG 192278 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||| ||||| |||||||| || Sbjct 192277 AGGGTTTTGACGAAGATCTGCATCTT 192252 >seq255 Length=465567 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 378084 CTATCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 378025 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||| || Sbjct 378024 GCCAATATTTAGCGTT 378009 >seq78 Length=963227 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||||| || |||||||| || | | | || |||| || | ||| Sbjct 597695 TGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGT 597754 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || || ||||||||||| | || | ||||| ||||| ||||| Sbjct 597755 TTTCCGGCGAAGATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTG 597814 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | || ||||| | |||||| || | || || || |||||||| Sbjct 597815 GCCTTGACGTTGTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTT 597874 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||| ||||| |||||||| || Sbjct 597875 AGGGTTTTGACGAAGATCTGCATCTT 597900 >seq37 Length=1182629 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT-CGTCGTCTAATTG 38173 ||||| ||| |||||| ||||||||||| |||| ||| | || | || || || || Sbjct 291737 TGAAGGGTGGACTCCTTCTGAATATTGTAGTCAG-CAAGGGTCCTTCCATCCTCCAACTG 291795 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || ||||| || | | || ||||| | ||||| ||||| || ||| |||||| Sbjct 291796 CTTCCCTGCAAAGATCAACCTCTGCTGATCAGTGGGGATACCTTCCTTATCCTGAATTTT 291855 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||||||||| | | ||||| || || || || || ||||| || ||||| || Sbjct 291856 GGCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTACCAGT 291915 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || |||||||| Sbjct 291916 CAAAGTCTTAACAAAAATCTGCAT 291939 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||||||||| ||| | |||||| || |||||| || ||||||||||| | Sbjct 291939 TACCACCCCTCAAACGCAGCACAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCCG 291998 Query 38149 ACAAAACACGTT-CGTCGTCTAATTGTTT-TCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||| | || | || || || ||||| ||| ||||| || | | || ||||| | Sbjct 291999 -CAAGGGTCCTTCCATCTTCCAACTGTTTATCCAGCAAAGATCAACCTCTGCTGATCTGG 292057 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 ||| | || || || ||| || || ||| ||||| | | || ||| ||||| Sbjct 292058 GGGAATACCCTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTTTC 292117 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || ||||| || ||||| ||||| ||||| Sbjct 292118 CACCTCCAAGGTTATGGTCTTTCCGGTCAAAGTCTTCACAAATATTTGCAT 292168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | || | |||||| ||| |||||| || || |||||||||| Sbjct 292901 TACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAG 292960 Query 38149 ACAAAACACGTTC-GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | ||| ||| || || || |||||||| || || || ||||| ||||| | Sbjct 292961 -CAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGA 293019 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| || || || || || | || || || ||||| Sbjct 293020 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCC 293079 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || || | ||||||||||| || ||||| Sbjct 293080 ACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 >seq426 Length=522792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||||| || |||||||| || | | | || |||| || | ||| Sbjct 162616 TGAAGAGTTGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGT 162675 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| || || || || ||||||||||| | || | ||||| ||||| ||||| Sbjct 162676 TTTCCTGCGAAGATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTG 162735 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | || ||||| | |||||| || | || || || |||||||| Sbjct 162736 GCCTTGACGTTGTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTT 162795 Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320 | |||||| ||||| |||||||| || Sbjct 162796 AGGGTTTTGACGAAGATCTGCATCTT 162821 >seq23 Length=202804 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| || ||| || ||||| || |||||||| | | | ||| | || || | ||| Sbjct 5463 ATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTACGGCCATCTTCGAGTTG 5404 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||||||| || || || ||||||||||| | || | ||||| ||||| |||||| Sbjct 5403 TTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTT 5344 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 || || || | || || || ||| || |||| || || ||||| || || Sbjct 5343 GGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT 5284 Query 38294 CAAGGTTTTCACGAATATCTGCATG 38318 | |||||||||||| || |||||| Sbjct 5283 TAGGGTTTTCACGAAGATTTGCATG 5259 >seq1436 Length=88924 Score = 84.2 bits (92), Expect = 1e-11 Identities = 163/237 (69%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | ||| | | ||||||||||| || ||| || || ||||| |||| Sbjct 7034 CATT-CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAAT 7092 Query 38146 CAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 | | ||| | ||| | || || ||||| || || ||||| || | || || ||| Sbjct 7093 CCG-CAAGA---GTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGA 7148 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | || | |||||||| ||| ||| || |||||| || | || || || Sbjct 7149 TCAGGAGGAATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAG 7208 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||| | ||| || ||||| || || | |||||| ||||| || |||||| Sbjct 7209 GATTCAACTTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCATG 7265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334835250597344