Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq520 277 2e-69 seq1210 246 4e-60 seq92 93.3 5e-14 >seq520 Length=294854 Score = 277 bits (306), Expect = 2e-69 Identities = 589/872 (68%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || ||||| || || || || || ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 |||||| |||| || ||||| |||||||||||||||| | | || | |||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 32546 |||||||| || ||||| || |||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 || || ||||| || || || ||||||| ||||| ||||| || | | Sbjct 261981 AGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACA 262038 Query 32607 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 |||| | | || |||||||| || | ||| | | | | ||||| || Sbjct 262039 ATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCA 262098 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| || || ||||| ||||| | ||| | ||||| ||||| || | || ||| Sbjct 262099 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 262158 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGATCCAGAAAAGAAAATTCC 32785 |||| ||||| |||||||||||||| || || | ||| | || || || || || || Sbjct 262159 ATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTA-CCGGAGAAAAATATACC 262217 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACT 32844 ||| || ||||| |||| | ||| || || | | | || || ||||| | Sbjct 262218 TTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGA-ATCGATCCATT 262276 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 | ||||||||| || ||||| | |||||| || || || || |||| ||| | | Sbjct 262277 TCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAAC 262336 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 || ||||| || ||| || | ||| || |||||||| |||||||||||||| |||| Sbjct 262337 GATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAAT 262396 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTT 33024 ||||||||||||| || || || || ||||| ||| | ||||| | | || |||| Sbjct 262397 GAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTT 262456 Query 33025 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 || | |||| | | || | ||| || ||||| ||||| ||| ||||| || | Sbjct 262457 CTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAG 262516 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 | | || ||| || || | |||| | ||||| || ||||| | | | || Sbjct 262517 CAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGAT 262576 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 ||| || | ||| |||||||| ||||||| ||||| || || || ||||| ||||| | Sbjct 262577 CTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTT 262636 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATA 33236 ||| || | | | |||||||| || || ||| Sbjct 262637 CCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 246 bits (272), Expect = 4e-60 Identities = 589/876 (67%), Gaps = 16/876 (2%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || || || || || || || ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| ||||||||||||||| | | || | ||| | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT--A 32546 ||||||||| || ||||| || ||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 || || ||||| || | || ||||||| || || || || || | | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 32607 ATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 || | |||| || ||||| || || | ||| | | | |||||||| || Sbjct 42890 ATCG-TCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGC 42832 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||||| || || || || ||||| | ||| | ||||| ||||| || | || || Sbjct 42831 AAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 42772 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTC 32784 ||||| ||||| ||||||||||| || || | | || || |||||| || || || | Sbjct 42771 CATTAAACCACGTTTTTTAAGCCAGAAAATTG-CACAGAAACTTCCAGAGAAAAATATAC 42713 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCAC 32843 |||| || ||||| |||| | || || || | | | || || ||||| Sbjct 42712 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGA-ATCGATCCAT 42654 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 || ||||||||| || |||||| | | |||||| || || || || |||| ||| | | Sbjct 42653 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAA 42594 Query 32904 TAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 || || ||| ||| ||| || | ||| || |||||||| |||||||||||||| | Sbjct 42593 CGATTCTTCTCA--ACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAG 42536 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGT 33020 ||||||| || || || || || || ||||||||||| ||| | ||||| | | || Sbjct 42535 AATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCTGAGACTTGA 42477 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||||| | |||| | |||| | ||| || || || ||||| || ||||| Sbjct 42476 ACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAG 42417 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || || | || ||| ||||| | |||| | ||||| || ||||| | || Sbjct 42416 AAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGA 42357 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 | ||||| |||| ||| |||||||| | ||||| || || || || || ||||| ||| Sbjct 42356 AGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTAC 42297 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || | |||||| | | | ||||||||||| || ||| Sbjct 42296 ATTTCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq92 Length=773687 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || |||||||| |||||||||||| | | ||| | | || Sbjct 23503 GTTCCGGCATTGAAAAGAGTCGGAGAAGCATGAGTAAACCATCTCTGAGACATCAAATGA 23444 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | | ||| || || ||||| | ||||||||| || | ||| | ||||| | Sbjct 23443 TAAGTTTTGACAGCAGATTCAATATCATCCTTATGAATTCCAACAGAGACCCTCATTAGC 23384 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||| ||||| ||||| || | ||| | || | |||||||| || ||| | || | Sbjct 23383 ATGTGTTGAGGCCTTTCCAC-AACTTCTCCTTGAACTTTCAACAGATAAGATCTCTCAAG 23325 Query 63646 AGTTTTAAAACCAAAATA 63663 ||||| || ||||| || Sbjct 23324 GGTTTTGAATCCAAAGTA 23307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| |||||||| | || | || |||| ||| | || | ||||||||||| |||||| Sbjct 23837 TCCCCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACC 23778 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || ||||| || || || || || ||| |||||| || ||| || || Sbjct 23777 ATTAGAAGTCCCATTTGTTCCACGAATGTAACTGCCATAGGCACGTATGTTATGAACAGA 23718 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || |||| || | || || || | |||||||| || Sbjct 23717 AACACCAATTCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAGAGTATCATAAAT 23658 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||| |||||||| || |||| Sbjct 23657 CCCCTCAATACTATCCTCTTTCAT 23634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633414790950400