Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2319 365 5e-96 seq432 304 1e-77 seq318 118 1e-21 seq1296 113 5e-20 seq2286 105 8e-18 seq814 105 8e-18 seq2312 104 3e-17 seq1868 100 3e-16 seq2162 98.7 1e-15 seq1196 98.7 1e-15 seq686 98.7 1e-15 seq5156 93.3 5e-14 seq81 91.5 2e-13 >seq2319 Length=57875 Score = 365 bits (404), Expect = 5e-96 Identities = 439/594 (74%), Gaps = 2/594 (0%) Strand=Plus/Minus Query 166453 CCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 166512 || |||||||| || | ||||| ||| || |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 166513 GACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAG 166572 || | ||||| || || ||| ||| || ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 166573 CACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCA 166632 || || || || ||||| || || || ||| | |||||||| ||||||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 166633 CTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGA 166691 || ||| || |||||||| | || ||||| | | | | || | || || || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 166692 AACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGT 166751 || ||| ||| || | ||||||| || |||||||| ||||| ||||| || || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 166752 GGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCG 166811 |||||||||||||| || || || ||||||||||||||||| |||||||||||||| Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 166812 CTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGG 166871 || | || |||||||| || || |||||||| || |||||||||||||| || | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 166872 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGG 166931 | | || || ||||| ||||| | || || || || || ||||| ||| || | ||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 166932 TCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGA 166991 ||| |||||||| | ||||| ||||| ||| | | ||||||||| || |||||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 166992 AGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||| ||||| || ||||| ||||| || |||||||| || || ||||| | ||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 304 bits (336), Expect = 1e-77 Identities = 387/533 (73%), Gaps = 0/533 (0%) Strand=Plus/Plus Query 167516 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAG 167575 |||||| | | |||| ||||||||||| | ||||| ||||| | | | ||||| || Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 167576 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATG 167635 | || || || ||| ||||||| || || ||||| || || | | ||||| |||||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 167636 CTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTT 167695 | || |||||||| | | || || | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTC 47669 Query 167696 TCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGT 167755 || ||||| |||||||| ||||| ||||| || || || ||||| || || ||||| || Sbjct 47670 TCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 47729 Query 167756 TGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAG 167815 |||||||||||||| |||||||| ||||| |||||| ||||| | || || | || Sbjct 47730 TGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAA 47789 Query 167816 GGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGC 167875 || || ||||| ||||| | ||||| || ||||||||||||||||||||| | | ||| Sbjct 47790 GGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGC 47849 Query 167876 GGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGT 167935 | || | | | || || ||||| | ||| ||||| ||||| | | ||||||||| Sbjct 47850 GCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGG 47909 Query 167936 GAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATG 167995 || ||||| || ||| || ||| | | || || | || ||||||||||| ||| Sbjct 47910 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATG 47969 Query 167996 GTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAA 168048 ||||| |||||||| || ||||| ||||| ||||| ||||||| |||||| Sbjct 47970 GTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq318 Length=400206 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 166823 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCA 166882 ||||| | || || || ||||| || ||||||||||||| | | ||| | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 166883 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 166942 |||| ||||| | || | || || || ||||| ||| || | ||| ||| ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 166943 TGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACG 167002 | | ||||||||||| ||| | ||||||||| || ||||||||||| ||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 167003 AGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 | ||||| |||| || || |||| || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq1296 Length=110557 Score = 113 bits (124), Expect = 5e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 166519 ATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 166578 ||||| || || ||| ||| || ||||||| ||| |||| || || || ||||| || Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 166579 ATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTC 166638 || || ||||| || || || ||| | |||||||| ||||||||||| || || || ||| Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 166639 TCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGA 166697 || |||||||| | || |||| || | | | || | || || || |||| ||| Sbjct 75448 AGTGCTATGCACGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACTACAGAAAATGA 75390 Query 166698 GTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCT 166741 ||| || | ||||||| || |||||||| ||||| |||| Sbjct 75389 ATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq2286 Length=21248 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 6804 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 6745 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGG 168097 || |||||| |||||||| || ||||||||| | || || || || | ||| | ||| Sbjct 6744 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 6685 Query 168098 A 168098 | Sbjct 6684 A 6684 >seq814 Length=198837 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 115068 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 115127 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGG 168097 || |||||| |||||||| || ||||||||| | || || || || | ||| | ||| Sbjct 115128 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 115187 Query 168098 A 168098 | Sbjct 115188 A 115188 >seq2312 Length=20438 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 19752 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 19693 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGT 168084 || |||||| |||||||| || ||||||||| | || || || || Sbjct 19692 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 19646 >seq1868 Length=44937 Score = 100 bits (110), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| ||||||||||||||||| || ||||| |||| | |||| ||||| Sbjct 39548 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAA-TCTTGGGGTTGCT 39606 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGT 168084 || |||||| |||||||| || ||||||||| | || || || || Sbjct 39607 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq2162 Length=26882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 |||||||||||||| ||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 20885 GAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 20944 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGT 168084 || |||||| ||||||| || ||||||||| | || || || || Sbjct 20945 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 20991 >seq1196 Length=183224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 167942 GCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACT 168001 ||||| || ||| || ||| | | || || | || ||||||||||| |||||||| Sbjct 19745 GCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACC 19686 Query 168002 GCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCAC 168061 |||||||| || ||||| ||||| ||||| ||||||| |||||| ||||||| || Sbjct 19685 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACAT 19626 Query 168062 TTCTTTATGCTTTTCGT 168078 ||||||||| | || || Sbjct 19625 TTCTTTATGTTATTTGT 19609 >seq686 Length=409839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 52881 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 52940 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGT 168084 || |||||| |||||||| || || |||||| | || || || || Sbjct 52941 TTTTCCAATAAACGTTGGTTACATTTGTTTATGTTATTTGTCCCAGT 52987 >seq5156 Length=1562 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 167978 GAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCT 168037 || ||||||||||| ||||||| |||||||| || ||||| ||||| || || ||||| Sbjct 912 GAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTCGGGGTTGCT 853 Query 168038 TTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCC 168081 || |||||| |||||||| || ||||||||| | || || || Sbjct 852 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCC 809 >seq81 Length=695010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTG--TCTGTTTTTC 167729 || ||||| ||| | || || || || |||| |||||||| || | ||||| |||| Sbjct 211507 CGGCCTTATAATACAATCGCATTCTCCAGTCCAATTGCTGTTTTATTTCTTCTGTATTTC 211566 Query 167730 TCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGA 167789 || ||||| || || ||||| ||||||||||||||||| |||||||| |||| | Sbjct 211567 ATATTTATCCACTGGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAACAGCTA 211626 Query 167790 TATTTAGATTCCTACTATT 167808 ||||| ||||| | || || Sbjct 211627 TATTTCGATTCATTCTCTT 211645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567037552870400